Experiment: m.b. Nalidixic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20770 and CA264_20775 are separated by 93 nucleotides CA264_20775 and CA264_20780 are separated by 532 nucleotides
CA264_20770: CA264_20770 - oxidoreductase, at 13,793 to 15,757
_20770
CA264_20775: CA264_20775 - hypothetical protein, at 15,851 to 16,450
_20775
CA264_20780: CA264_20780 - alpha-glucan family phosphorylase, at 16,983 to 18,638
_20780
Position (kb)
15
16
17 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 14.913 kb on - strand, within CA264_20770 at 14.927 kb on - strand, within CA264_20770 at 15.096 kb on + strand, within CA264_20770 at 15.097 kb on - strand, within CA264_20770 at 15.097 kb on - strand, within CA264_20770 at 15.097 kb on - strand, within CA264_20770 at 15.142 kb on + strand, within CA264_20770 at 15.143 kb on - strand, within CA264_20770 at 15.148 kb on - strand, within CA264_20770 at 15.188 kb on + strand, within CA264_20770 at 15.188 kb on + strand, within CA264_20770 at 15.189 kb on - strand, within CA264_20770 at 15.199 kb on - strand, within CA264_20770 at 15.205 kb on + strand, within CA264_20770 at 15.239 kb on + strand, within CA264_20770 at 15.352 kb on - strand, within CA264_20770 at 15.432 kb on - strand, within CA264_20770 at 15.441 kb on - strand, within CA264_20770 at 15.492 kb on + strand, within CA264_20770 at 15.514 kb on + strand, within CA264_20770 at 15.659 kb on - strand at 15.708 kb on - strand at 15.737 kb on + strand at 15.822 kb on + strand at 15.829 kb on - strand at 15.852 kb on + strand at 15.852 kb on + strand at 15.853 kb on - strand at 15.853 kb on - strand at 15.856 kb on + strand at 15.889 kb on + strand at 15.890 kb on - strand at 15.905 kb on - strand at 15.916 kb on + strand, within CA264_20775 at 15.917 kb on - strand, within CA264_20775 at 15.917 kb on - strand, within CA264_20775 at 15.928 kb on + strand, within CA264_20775 at 15.983 kb on - strand, within CA264_20775 at 16.066 kb on + strand, within CA264_20775 at 16.066 kb on + strand, within CA264_20775 at 16.067 kb on - strand, within CA264_20775 at 16.087 kb on + strand, within CA264_20775 at 16.088 kb on - strand, within CA264_20775 at 16.088 kb on - strand, within CA264_20775 at 16.088 kb on - strand, within CA264_20775 at 16.144 kb on + strand, within CA264_20775 at 16.144 kb on + strand, within CA264_20775 at 16.145 kb on - strand, within CA264_20775 at 16.145 kb on - strand, within CA264_20775 at 16.207 kb on + strand, within CA264_20775 at 16.207 kb on + strand, within CA264_20775 at 16.208 kb on - strand, within CA264_20775 at 16.312 kb on + strand, within CA264_20775 at 16.312 kb on + strand, within CA264_20775 at 16.312 kb on + strand, within CA264_20775 at 16.313 kb on - strand, within CA264_20775 at 16.313 kb on - strand, within CA264_20775 at 16.365 kb on - strand, within CA264_20775 at 16.367 kb on - strand, within CA264_20775 at 16.396 kb on + strand at 16.397 kb on - strand at 16.430 kb on + strand at 16.431 kb on - strand at 16.453 kb on + strand at 16.453 kb on + strand at 16.462 kb on + strand at 16.525 kb on + strand at 16.526 kb on - strand at 16.526 kb on - strand at 16.548 kb on + strand at 16.549 kb on - strand at 16.552 kb on + strand at 16.553 kb on - strand at 16.553 kb on - strand at 16.553 kb on - strand at 16.557 kb on - strand at 16.592 kb on + strand at 16.641 kb on - strand at 16.670 kb on + strand at 16.670 kb on + strand at 16.670 kb on + strand at 16.686 kb on + strand at 16.686 kb on + strand at 16.697 kb on + strand at 16.698 kb on - strand at 16.734 kb on + strand at 16.734 kb on + strand at 16.735 kb on - strand at 16.735 kb on - strand at 16.735 kb on - strand at 16.735 kb on - strand at 16.741 kb on - strand at 16.745 kb on + strand at 16.763 kb on - strand at 16.767 kb on + strand at 16.767 kb on + strand at 16.767 kb on + strand at 16.858 kb on + strand at 16.868 kb on - strand at 16.868 kb on - strand at 16.883 kb on + strand at 16.951 kb on + strand at 16.951 kb on + strand at 16.951 kb on + strand at 16.951 kb on + strand at 16.954 kb on + strand at 16.992 kb on - strand at 16.993 kb on + strand at 16.994 kb on - strand at 16.994 kb on - strand at 16.994 kb on - strand at 17.006 kb on - strand at 17.008 kb on + strand at 17.008 kb on + strand at 17.008 kb on + strand at 17.008 kb on + strand at 17.009 kb on - strand at 17.098 kb on + strand at 17.130 kb on - strand at 17.289 kb on - strand, within CA264_20780 at 17.327 kb on + strand, within CA264_20780 at 17.331 kb on + strand, within CA264_20780 at 17.386 kb on - strand, within CA264_20780 at 17.408 kb on - strand, within CA264_20780 at 17.424 kb on + strand, within CA264_20780 at 17.424 kb on + strand, within CA264_20780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml remove 14,913 - CA264_20770 0.57 -0.4 14,927 - CA264_20770 0.58 -1.7 15,096 + CA264_20770 0.66 -1.8 15,097 - CA264_20770 0.66 -0.5 15,097 - CA264_20770 0.66 -0.9 15,097 - CA264_20770 0.66 -1.2 15,142 + CA264_20770 0.69 -0.8 15,143 - CA264_20770 0.69 +0.1 15,148 - CA264_20770 0.69 -1.4 15,188 + CA264_20770 0.71 -1.7 15,188 + CA264_20770 0.71 -2.3 15,189 - CA264_20770 0.71 -1.3 15,199 - CA264_20770 0.72 -0.5 15,205 + CA264_20770 0.72 -0.1 15,239 + CA264_20770 0.74 -0.5 15,352 - CA264_20770 0.79 -0.8 15,432 - CA264_20770 0.83 -1.4 15,441 - CA264_20770 0.84 -0.8 15,492 + CA264_20770 0.86 -0.8 15,514 + CA264_20770 0.88 -0.3 15,659 - -1.9 15,708 - -0.9 15,737 + -1.1 15,822 + -1.2 15,829 - -2.1 15,852 + -0.9 15,852 + -2.5 15,853 - -0.5 15,853 - -0.4 15,856 + -0.1 15,889 + -0.9 15,890 - +0.3 15,905 - -1.5 15,916 + CA264_20775 0.11 +0.1 15,917 - CA264_20775 0.11 -1.2 15,917 - CA264_20775 0.11 -0.8 15,928 + CA264_20775 0.13 +0.4 15,983 - CA264_20775 0.22 -0.1 16,066 + CA264_20775 0.36 -0.6 16,066 + CA264_20775 0.36 -1.2 16,067 - CA264_20775 0.36 -0.6 16,087 + CA264_20775 0.39 -0.5 16,088 - CA264_20775 0.40 +0.4 16,088 - CA264_20775 0.40 -0.9 16,088 - CA264_20775 0.40 -0.4 16,144 + CA264_20775 0.49 -0.1 16,144 + CA264_20775 0.49 -2.1 16,145 - CA264_20775 0.49 -0.4 16,145 - CA264_20775 0.49 +0.1 16,207 + CA264_20775 0.59 -1.1 16,207 + CA264_20775 0.59 -0.9 16,208 - CA264_20775 0.59 -0.7 16,312 + CA264_20775 0.77 -0.2 16,312 + CA264_20775 0.77 -1.3 16,312 + CA264_20775 0.77 -0.0 16,313 - CA264_20775 0.77 -1.0 16,313 - CA264_20775 0.77 -1.0 16,365 - CA264_20775 0.86 -0.9 16,367 - CA264_20775 0.86 -0.6 16,396 + -0.7 16,397 - -0.6 16,430 + -0.4 16,431 - -0.7 16,453 + -0.7 16,453 + -0.8 16,462 + -0.8 16,525 + +0.3 16,526 - -1.8 16,526 - -0.4 16,548 + -1.6 16,549 - -1.2 16,552 + -0.1 16,553 - -0.7 16,553 - +0.1 16,553 - -1.5 16,557 - -0.6 16,592 + -1.1 16,641 - -1.2 16,670 + -0.4 16,670 + -0.9 16,670 + -0.1 16,686 + -0.6 16,686 + -0.8 16,697 + -1.7 16,698 - +0.5 16,734 + -0.5 16,734 + -0.7 16,735 - +0.6 16,735 - -1.1 16,735 - -0.6 16,735 - -0.7 16,741 - -0.7 16,745 + -0.6 16,763 - -1.0 16,767 + -0.6 16,767 + -0.8 16,767 + +1.9 16,858 + -1.5 16,868 - -0.6 16,868 - -1.9 16,883 + -0.7 16,951 + -0.7 16,951 + +1.4 16,951 + -0.8 16,951 + -0.6 16,954 + -0.6 16,992 - -1.7 16,993 + -0.9 16,994 - -1.2 16,994 - -0.1 16,994 - -3.6 17,006 - -0.7 17,008 + -1.8 17,008 + -2.6 17,008 + -0.7 17,008 + -0.8 17,009 - -0.6 17,098 + -0.2 17,130 - -0.5 17,289 - CA264_20780 0.18 -0.6 17,327 + CA264_20780 0.21 -0.7 17,331 + CA264_20780 0.21 -0.5 17,386 - CA264_20780 0.24 -0.9 17,408 - CA264_20780 0.26 -0.6 17,424 + CA264_20780 0.27 -0.8 17,424 + CA264_20780 0.27 -0.0
Or see this region's nucleotide sequence