Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20625

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20620 and CA264_20625 are separated by 95 nucleotidesCA264_20625 and CA264_20630 are separated by 115 nucleotides CA264_20620: CA264_20620 - mammalian cell entry protein, at 4,747,529 to 4,748,626 _20620 CA264_20625: CA264_20625 - methylcrotonoyl-CoA carboxylase, at 4,748,722 to 4,750,350 _20625 CA264_20630: CA264_20630 - hypothetical protein, at 4,750,466 to 4,751,314 _20630 Position (kb) 4748 4749 4750 4751Strain fitness (log2 ratio) -3 -2 -1 0 1at 4747.762 kb on + strand, within CA264_20620at 4747.762 kb on + strand, within CA264_20620at 4747.886 kb on + strand, within CA264_20620at 4747.886 kb on + strand, within CA264_20620at 4747.886 kb on + strand, within CA264_20620at 4747.886 kb on + strand, within CA264_20620at 4747.887 kb on - strand, within CA264_20620at 4747.887 kb on - strand, within CA264_20620at 4748.040 kb on + strand, within CA264_20620at 4748.041 kb on - strand, within CA264_20620at 4748.086 kb on - strand, within CA264_20620at 4748.106 kb on + strand, within CA264_20620at 4748.107 kb on - strand, within CA264_20620at 4748.411 kb on + strand, within CA264_20620at 4748.447 kb on + strand, within CA264_20620at 4748.448 kb on - strand, within CA264_20620at 4748.448 kb on - strand, within CA264_20620at 4748.449 kb on + strand, within CA264_20620at 4748.546 kb on + strandat 4748.547 kb on - strandat 4748.648 kb on + strandat 4748.705 kb on + strandat 4748.715 kb on - strandat 4748.868 kb on + strandat 4748.869 kb on - strandat 4748.876 kb on - strandat 4748.987 kb on - strand, within CA264_20625at 4749.119 kb on - strand, within CA264_20625at 4749.249 kb on + strand, within CA264_20625at 4749.250 kb on - strand, within CA264_20625at 4749.277 kb on + strand, within CA264_20625at 4749.346 kb on + strand, within CA264_20625at 4749.436 kb on + strand, within CA264_20625at 4749.436 kb on + strand, within CA264_20625at 4749.445 kb on - strand, within CA264_20625at 4749.445 kb on - strand, within CA264_20625at 4749.445 kb on - strand, within CA264_20625at 4749.445 kb on - strand, within CA264_20625at 4749.633 kb on + strand, within CA264_20625at 4749.652 kb on + strand, within CA264_20625at 4749.653 kb on - strand, within CA264_20625at 4749.653 kb on - strand, within CA264_20625at 4749.653 kb on - strand, within CA264_20625at 4749.654 kb on + strand, within CA264_20625at 4749.655 kb on - strand, within CA264_20625at 4749.655 kb on - strand, within CA264_20625at 4749.665 kb on - strand, within CA264_20625at 4749.816 kb on + strand, within CA264_20625at 4749.817 kb on - strand, within CA264_20625at 4749.925 kb on - strand, within CA264_20625at 4749.975 kb on - strand, within CA264_20625at 4749.975 kb on - strand, within CA264_20625at 4750.003 kb on + strand, within CA264_20625at 4750.004 kb on - strand, within CA264_20625at 4750.004 kb on - strand, within CA264_20625at 4750.042 kb on + strand, within CA264_20625at 4750.043 kb on - strand, within CA264_20625at 4750.043 kb on - strand, within CA264_20625at 4750.146 kb on - strand, within CA264_20625at 4750.192 kb on + strandat 4750.192 kb on + strandat 4750.193 kb on - strandat 4750.193 kb on - strandat 4750.193 kb on - strandat 4750.213 kb on + strandat 4750.216 kb on + strandat 4750.217 kb on - strandat 4750.289 kb on + strandat 4750.365 kb on + strandat 4750.396 kb on + strandat 4750.397 kb on - strandat 4750.406 kb on + strandat 4750.407 kb on - strandat 4750.453 kb on + strandat 4750.462 kb on + strandat 4750.462 kb on + strandat 4750.464 kb on + strandat 4750.724 kb on + strand, within CA264_20630at 4750.739 kb on + strand, within CA264_20630at 4750.794 kb on - strand, within CA264_20630at 4750.794 kb on - strand, within CA264_20630at 4750.835 kb on + strand, within CA264_20630at 4750.845 kb on + strand, within CA264_20630at 4750.846 kb on - strand, within CA264_20630at 4750.983 kb on - strand, within CA264_20630at 4751.050 kb on + strand, within CA264_20630at 4751.051 kb on - strand, within CA264_20630at 4751.051 kb on - strand, within CA264_20630at 4751.054 kb on + strand, within CA264_20630at 4751.054 kb on + strand, within CA264_20630at 4751.054 kb on + strand, within CA264_20630at 4751.055 kb on - strand, within CA264_20630at 4751.055 kb on - strand, within CA264_20630at 4751.057 kb on - strand, within CA264_20630at 4751.091 kb on - strand, within CA264_20630at 4751.105 kb on - strand, within CA264_20630at 4751.106 kb on + strand, within CA264_20630at 4751.132 kb on + strand, within CA264_20630at 4751.132 kb on + strand, within CA264_20630at 4751.132 kb on + strand, within CA264_20630at 4751.133 kb on - strand, within CA264_20630at 4751.133 kb on - strand, within CA264_20630at 4751.133 kb on - strand, within CA264_20630at 4751.200 kb on - strand, within CA264_20630at 4751.287 kb on + strandat 4751.313 kb on - strandat 4751.313 kb on - strandat 4751.313 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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4,747,762 + CA264_20620 0.21 -0.5
4,747,762 + CA264_20620 0.21 -0.9
4,747,886 + CA264_20620 0.33 -1.9
4,747,886 + CA264_20620 0.33 -0.4
4,747,886 + CA264_20620 0.33 -0.7
4,747,886 + CA264_20620 0.33 +0.2
4,747,887 - CA264_20620 0.33 -1.3
4,747,887 - CA264_20620 0.33 -1.4
4,748,040 + CA264_20620 0.47 -1.4
4,748,041 - CA264_20620 0.47 +0.4
4,748,086 - CA264_20620 0.51 +0.4
4,748,106 + CA264_20620 0.53 -0.4
4,748,107 - CA264_20620 0.53 -0.4
4,748,411 + CA264_20620 0.80 -1.4
4,748,447 + CA264_20620 0.84 -2.0
4,748,448 - CA264_20620 0.84 +0.2
4,748,448 - CA264_20620 0.84 -1.8
4,748,449 + CA264_20620 0.84 -1.4
4,748,546 + -2.1
4,748,547 - +0.2
4,748,648 + -0.4
4,748,705 + -0.9
4,748,715 - -0.9
4,748,868 + +0.1
4,748,869 - -1.2
4,748,876 - -1.0
4,748,987 - CA264_20625 0.16 -0.8
4,749,119 - CA264_20625 0.24 -0.8
4,749,249 + CA264_20625 0.32 -1.4
4,749,250 - CA264_20625 0.32 -0.8
4,749,277 + CA264_20625 0.34 -1.1
4,749,346 + CA264_20625 0.38 +0.2
4,749,436 + CA264_20625 0.44 -1.8
4,749,436 + CA264_20625 0.44 +0.7
4,749,445 - CA264_20625 0.44 -0.4
4,749,445 - CA264_20625 0.44 +0.8
4,749,445 - CA264_20625 0.44 -1.2
4,749,445 - CA264_20625 0.44 -0.3
4,749,633 + CA264_20625 0.56 +0.1
4,749,652 + CA264_20625 0.57 +1.5
4,749,653 - CA264_20625 0.57 -1.1
4,749,653 - CA264_20625 0.57 -2.0
4,749,653 - CA264_20625 0.57 -0.3
4,749,654 + CA264_20625 0.57 -0.2
4,749,655 - CA264_20625 0.57 -0.8
4,749,655 - CA264_20625 0.57 +0.8
4,749,665 - CA264_20625 0.58 -3.0
4,749,816 + CA264_20625 0.67 -1.4
4,749,817 - CA264_20625 0.67 +0.3
4,749,925 - CA264_20625 0.74 -0.3
4,749,975 - CA264_20625 0.77 -0.2
4,749,975 - CA264_20625 0.77 +0.6
4,750,003 + CA264_20625 0.79 +1.3
4,750,004 - CA264_20625 0.79 -0.6
4,750,004 - CA264_20625 0.79 -0.5
4,750,042 + CA264_20625 0.81 -0.7
4,750,043 - CA264_20625 0.81 -2.3
4,750,043 - CA264_20625 0.81 +1.3
4,750,146 - CA264_20625 0.87 -0.1
4,750,192 + -1.7
4,750,192 + -0.3
4,750,193 - +0.5
4,750,193 - -0.6
4,750,193 - -1.6
4,750,213 + -0.9
4,750,216 + +0.1
4,750,217 - -2.9
4,750,289 + -0.3
4,750,365 + -0.1
4,750,396 + -0.6
4,750,397 - -1.1
4,750,406 + -2.1
4,750,407 - +1.5
4,750,453 + -1.1
4,750,462 + -1.0
4,750,462 + -0.8
4,750,464 + -1.2
4,750,724 + CA264_20630 0.30 -1.2
4,750,739 + CA264_20630 0.32 -0.3
4,750,794 - CA264_20630 0.39 -1.2
4,750,794 - CA264_20630 0.39 -0.1
4,750,835 + CA264_20630 0.43 -0.5
4,750,845 + CA264_20630 0.45 -1.6
4,750,846 - CA264_20630 0.45 -1.4
4,750,983 - CA264_20630 0.61 -1.1
4,751,050 + CA264_20630 0.69 -1.3
4,751,051 - CA264_20630 0.69 +1.4
4,751,051 - CA264_20630 0.69 -0.6
4,751,054 + CA264_20630 0.69 -1.2
4,751,054 + CA264_20630 0.69 -0.8
4,751,054 + CA264_20630 0.69 -1.3
4,751,055 - CA264_20630 0.69 -1.3
4,751,055 - CA264_20630 0.69 -1.3
4,751,057 - CA264_20630 0.70 -0.2
4,751,091 - CA264_20630 0.74 -0.7
4,751,105 - CA264_20630 0.75 -0.2
4,751,106 + CA264_20630 0.75 +0.5
4,751,132 + CA264_20630 0.78 -1.0
4,751,132 + CA264_20630 0.78 -1.1
4,751,132 + CA264_20630 0.78 -1.8
4,751,133 - CA264_20630 0.79 -1.0
4,751,133 - CA264_20630 0.79 -1.4
4,751,133 - CA264_20630 0.79 -0.7
4,751,200 - CA264_20630 0.86 -1.2
4,751,287 + -0.9
4,751,313 - -0.8
4,751,313 - -1.8
4,751,313 - -1.9

Or see this region's nucleotide sequence