Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10345

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10340 and CA264_10345 overlap by 32 nucleotidesCA264_10345 and CA264_10350 are separated by 193 nucleotides CA264_10340: CA264_10340 - recombinase family protein, at 2,404,150 to 2,405,688 _10340 CA264_10345: CA264_10345 - tRNA-Arg, at 2,405,657 to 2,405,733 _10345 CA264_10350: CA264_10350 - hypothetical protein, at 2,405,927 to 2,407,333 _10350 Position (kb) 2405 2406Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2404.660 kb on - strand, within CA264_10340at 2404.663 kb on + strand, within CA264_10340at 2404.776 kb on + strand, within CA264_10340at 2404.845 kb on + strand, within CA264_10340at 2404.849 kb on + strand, within CA264_10340at 2404.849 kb on + strand, within CA264_10340at 2404.851 kb on + strand, within CA264_10340at 2404.851 kb on + strand, within CA264_10340at 2404.851 kb on + strand, within CA264_10340at 2404.875 kb on - strand, within CA264_10340at 2405.000 kb on - strand, within CA264_10340at 2405.063 kb on - strand, within CA264_10340at 2405.066 kb on - strand, within CA264_10340at 2405.071 kb on + strand, within CA264_10340at 2405.074 kb on + strand, within CA264_10340at 2405.075 kb on - strand, within CA264_10340at 2405.075 kb on - strand, within CA264_10340at 2405.153 kb on - strand, within CA264_10340at 2405.153 kb on - strand, within CA264_10340at 2405.153 kb on - strand, within CA264_10340at 2405.153 kb on - strand, within CA264_10340at 2405.182 kb on + strand, within CA264_10340at 2405.182 kb on + strand, within CA264_10340at 2405.183 kb on - strand, within CA264_10340at 2405.183 kb on - strand, within CA264_10340at 2405.220 kb on + strand, within CA264_10340at 2405.607 kb on - strandat 2405.757 kb on + strandat 2405.758 kb on - strandat 2405.807 kb on + strandat 2405.835 kb on - strandat 2405.849 kb on + strandat 2405.850 kb on - strandat 2405.851 kb on + strandat 2405.854 kb on + strandat 2405.855 kb on - strandat 2405.855 kb on - strandat 2405.924 kb on + strandat 2405.924 kb on + strandat 2405.925 kb on - strandat 2405.926 kb on + strandat 2405.927 kb on - strandat 2405.991 kb on - strandat 2405.991 kb on - strandat 2406.000 kb on - strandat 2406.039 kb on + strandat 2406.040 kb on - strandat 2406.042 kb on + strandat 2406.043 kb on - strandat 2406.045 kb on + strandat 2406.058 kb on - strandat 2406.058 kb on - strandat 2406.064 kb on + strandat 2406.065 kb on - strandat 2406.067 kb on + strandat 2406.067 kb on + strandat 2406.068 kb on - strand, within CA264_10350at 2406.121 kb on + strand, within CA264_10350at 2406.139 kb on + strand, within CA264_10350at 2406.190 kb on + strand, within CA264_10350at 2406.214 kb on - strand, within CA264_10350at 2406.227 kb on - strand, within CA264_10350at 2406.227 kb on - strand, within CA264_10350at 2406.255 kb on + strand, within CA264_10350at 2406.259 kb on + strand, within CA264_10350at 2406.259 kb on + strand, within CA264_10350at 2406.260 kb on - strand, within CA264_10350at 2406.260 kb on - strand, within CA264_10350at 2406.313 kb on + strand, within CA264_10350at 2406.327 kb on + strand, within CA264_10350at 2406.359 kb on + strand, within CA264_10350at 2406.360 kb on - strand, within CA264_10350at 2406.360 kb on - strand, within CA264_10350at 2406.414 kb on + strand, within CA264_10350at 2406.418 kb on - strand, within CA264_10350at 2406.426 kb on - strand, within CA264_10350at 2406.430 kb on + strand, within CA264_10350at 2406.431 kb on - strand, within CA264_10350at 2406.431 kb on - strand, within CA264_10350at 2406.431 kb on - strand, within CA264_10350at 2406.464 kb on - strand, within CA264_10350at 2406.517 kb on + strand, within CA264_10350at 2406.518 kb on - strand, within CA264_10350at 2406.573 kb on - strand, within CA264_10350at 2406.576 kb on + strand, within CA264_10350at 2406.577 kb on - strand, within CA264_10350at 2406.577 kb on - strand, within CA264_10350at 2406.581 kb on + strand, within CA264_10350at 2406.596 kb on - strand, within CA264_10350at 2406.599 kb on + strand, within CA264_10350at 2406.600 kb on - strand, within CA264_10350at 2406.603 kb on - strand, within CA264_10350at 2406.676 kb on - strand, within CA264_10350at 2406.692 kb on + strand, within CA264_10350

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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2,404,660 - CA264_10340 0.33 -2.3
2,404,663 + CA264_10340 0.33 -0.5
2,404,776 + CA264_10340 0.41 -1.7
2,404,845 + CA264_10340 0.45 +0.1
2,404,849 + CA264_10340 0.45 -1.9
2,404,849 + CA264_10340 0.45 +0.1
2,404,851 + CA264_10340 0.46 -0.5
2,404,851 + CA264_10340 0.46 -1.0
2,404,851 + CA264_10340 0.46 -0.2
2,404,875 - CA264_10340 0.47 -1.1
2,405,000 - CA264_10340 0.55 -1.9
2,405,063 - CA264_10340 0.59 +0.2
2,405,066 - CA264_10340 0.60 -1.8
2,405,071 + CA264_10340 0.60 -3.0
2,405,074 + CA264_10340 0.60 +0.9
2,405,075 - CA264_10340 0.60 -1.9
2,405,075 - CA264_10340 0.60 -0.6
2,405,153 - CA264_10340 0.65 -0.9
2,405,153 - CA264_10340 0.65 -1.0
2,405,153 - CA264_10340 0.65 -0.6
2,405,153 - CA264_10340 0.65 -3.1
2,405,182 + CA264_10340 0.67 -0.2
2,405,182 + CA264_10340 0.67 -0.5
2,405,183 - CA264_10340 0.67 -0.7
2,405,183 - CA264_10340 0.67 +0.8
2,405,220 + CA264_10340 0.70 +0.9
2,405,607 - -0.1
2,405,757 + -0.3
2,405,758 - -1.4
2,405,807 + -2.6
2,405,835 - -0.6
2,405,849 + -2.5
2,405,850 - -0.6
2,405,851 + -2.3
2,405,854 + -1.5
2,405,855 - -0.6
2,405,855 - -0.8
2,405,924 + -1.5
2,405,924 + +1.1
2,405,925 - -1.7
2,405,926 + +0.1
2,405,927 - -1.2
2,405,991 - -0.1
2,405,991 - -0.0
2,406,000 - +0.4
2,406,039 + +0.8
2,406,040 - -1.9
2,406,042 + -1.0
2,406,043 - -2.7
2,406,045 + +1.9
2,406,058 - -0.8
2,406,058 - +0.7
2,406,064 + +0.3
2,406,065 - -0.3
2,406,067 + +4.1
2,406,067 + -0.4
2,406,068 - CA264_10350 0.10 -1.2
2,406,121 + CA264_10350 0.14 +1.1
2,406,139 + CA264_10350 0.15 -0.1
2,406,190 + CA264_10350 0.19 -0.1
2,406,214 - CA264_10350 0.20 -2.0
2,406,227 - CA264_10350 0.21 -0.6
2,406,227 - CA264_10350 0.21 -0.9
2,406,255 + CA264_10350 0.23 -1.7
2,406,259 + CA264_10350 0.24 -1.0
2,406,259 + CA264_10350 0.24 -2.4
2,406,260 - CA264_10350 0.24 -0.4
2,406,260 - CA264_10350 0.24 -0.6
2,406,313 + CA264_10350 0.27 +2.5
2,406,327 + CA264_10350 0.28 +1.3
2,406,359 + CA264_10350 0.31 +1.6
2,406,360 - CA264_10350 0.31 -0.6
2,406,360 - CA264_10350 0.31 -0.4
2,406,414 + CA264_10350 0.35 -0.6
2,406,418 - CA264_10350 0.35 -0.4
2,406,426 - CA264_10350 0.35 +0.4
2,406,430 + CA264_10350 0.36 -0.3
2,406,431 - CA264_10350 0.36 +1.8
2,406,431 - CA264_10350 0.36 +0.3
2,406,431 - CA264_10350 0.36 -0.6
2,406,464 - CA264_10350 0.38 -0.3
2,406,517 + CA264_10350 0.42 -1.7
2,406,518 - CA264_10350 0.42 -0.8
2,406,573 - CA264_10350 0.46 -0.1
2,406,576 + CA264_10350 0.46 -2.2
2,406,577 - CA264_10350 0.46 -0.9
2,406,577 - CA264_10350 0.46 -0.9
2,406,581 + CA264_10350 0.46 -1.6
2,406,596 - CA264_10350 0.48 -0.4
2,406,599 + CA264_10350 0.48 -2.1
2,406,600 - CA264_10350 0.48 +0.1
2,406,603 - CA264_10350 0.48 -1.1
2,406,676 - CA264_10350 0.53 -0.4
2,406,692 + CA264_10350 0.54 +0.7

Or see this region's nucleotide sequence