Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09435

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09430 and CA264_09435 are separated by 1 nucleotidesCA264_09435 and CA264_09440 overlap by 1 nucleotidesCA264_09440 and CA264_09445 overlap by 13 nucleotides CA264_09430: CA264_09430 - 2-isopropylmalate synthase, at 2,203,949 to 2,205,115 _09430 CA264_09435: CA264_09435 - 3-isopropylmalate dehydratase large subunit, at 2,205,117 to 2,206,511 _09435 CA264_09440: CA264_09440 - 3-isopropylmalate dehydratase small subunit, at 2,206,511 to 2,207,107 _09440 CA264_09445: CA264_09445 - 3-isopropylmalate dehydrogenase, at 2,207,095 to 2,208,216 _09445 Position (kb) 2205 2206 2207Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2204.271 kb on + strand, within CA264_09430at 2204.271 kb on + strand, within CA264_09430at 2204.272 kb on - strand, within CA264_09430at 2204.290 kb on + strand, within CA264_09430at 2204.455 kb on - strand, within CA264_09430at 2204.489 kb on + strand, within CA264_09430at 2204.513 kb on + strand, within CA264_09430at 2204.708 kb on + strand, within CA264_09430at 2204.879 kb on + strand, within CA264_09430at 2204.915 kb on - strand, within CA264_09430at 2204.985 kb on - strand, within CA264_09430at 2205.011 kb on - strandat 2205.017 kb on + strandat 2205.018 kb on - strandat 2205.192 kb on + strandat 2205.220 kb on + strandat 2205.220 kb on + strandat 2205.365 kb on - strand, within CA264_09435at 2205.393 kb on + strand, within CA264_09435at 2205.394 kb on - strand, within CA264_09435at 2205.426 kb on + strand, within CA264_09435at 2205.449 kb on - strand, within CA264_09435at 2205.449 kb on - strand, within CA264_09435at 2205.512 kb on + strand, within CA264_09435at 2205.513 kb on - strand, within CA264_09435at 2205.562 kb on + strand, within CA264_09435at 2205.764 kb on + strand, within CA264_09435at 2205.765 kb on - strand, within CA264_09435at 2205.787 kb on + strand, within CA264_09435at 2205.787 kb on + strand, within CA264_09435at 2205.814 kb on + strand, within CA264_09435at 2205.912 kb on + strand, within CA264_09435at 2205.913 kb on - strand, within CA264_09435at 2205.941 kb on - strand, within CA264_09435at 2205.984 kb on + strand, within CA264_09435at 2205.985 kb on - strand, within CA264_09435at 2205.985 kb on - strand, within CA264_09435at 2206.081 kb on - strand, within CA264_09435at 2206.081 kb on - strand, within CA264_09435at 2206.128 kb on + strand, within CA264_09435at 2206.129 kb on - strand, within CA264_09435at 2206.129 kb on - strand, within CA264_09435at 2206.253 kb on - strand, within CA264_09435at 2206.289 kb on - strand, within CA264_09435at 2206.289 kb on - strand, within CA264_09435at 2206.289 kb on - strand, within CA264_09435at 2206.510 kb on - strandat 2206.571 kb on - strand, within CA264_09440at 2206.582 kb on + strand, within CA264_09440at 2206.583 kb on - strand, within CA264_09440at 2206.583 kb on - strand, within CA264_09440at 2206.583 kb on - strand, within CA264_09440at 2206.584 kb on + strand, within CA264_09440at 2206.584 kb on + strand, within CA264_09440at 2206.652 kb on + strand, within CA264_09440at 2206.703 kb on + strand, within CA264_09440at 2206.870 kb on - strand, within CA264_09440at 2206.930 kb on + strand, within CA264_09440at 2206.935 kb on + strand, within CA264_09440at 2206.935 kb on + strand, within CA264_09440at 2206.936 kb on - strand, within CA264_09440at 2207.003 kb on + strand, within CA264_09440at 2207.003 kb on + strand, within CA264_09440at 2207.004 kb on - strand, within CA264_09440at 2207.078 kb on + strandat 2207.106 kb on - strandat 2207.338 kb on + strand, within CA264_09445at 2207.346 kb on + strand, within CA264_09445at 2207.437 kb on + strand, within CA264_09445

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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2,204,271 + CA264_09430 0.28 -0.7
2,204,271 + CA264_09430 0.28 -0.2
2,204,272 - CA264_09430 0.28 +0.8
2,204,290 + CA264_09430 0.29 -0.7
2,204,455 - CA264_09430 0.43 -0.1
2,204,489 + CA264_09430 0.46 -0.9
2,204,513 + CA264_09430 0.48 +0.5
2,204,708 + CA264_09430 0.65 -1.4
2,204,879 + CA264_09430 0.80 -1.7
2,204,915 - CA264_09430 0.83 -1.2
2,204,985 - CA264_09430 0.89 -0.8
2,205,011 - -3.0
2,205,017 + -1.9
2,205,018 - -2.6
2,205,192 + -0.1
2,205,220 + -0.5
2,205,220 + -0.2
2,205,365 - CA264_09435 0.18 -0.2
2,205,393 + CA264_09435 0.20 +0.8
2,205,394 - CA264_09435 0.20 -0.1
2,205,426 + CA264_09435 0.22 +0.8
2,205,449 - CA264_09435 0.24 -0.6
2,205,449 - CA264_09435 0.24 +1.2
2,205,512 + CA264_09435 0.28 +2.0
2,205,513 - CA264_09435 0.28 +0.0
2,205,562 + CA264_09435 0.32 -1.3
2,205,764 + CA264_09435 0.46 -0.7
2,205,765 - CA264_09435 0.46 -0.9
2,205,787 + CA264_09435 0.48 -0.1
2,205,787 + CA264_09435 0.48 -1.1
2,205,814 + CA264_09435 0.50 -0.4
2,205,912 + CA264_09435 0.57 -1.7
2,205,913 - CA264_09435 0.57 -1.7
2,205,941 - CA264_09435 0.59 -0.2
2,205,984 + CA264_09435 0.62 -1.5
2,205,985 - CA264_09435 0.62 -0.7
2,205,985 - CA264_09435 0.62 -0.4
2,206,081 - CA264_09435 0.69 -2.0
2,206,081 - CA264_09435 0.69 -1.1
2,206,128 + CA264_09435 0.72 -0.6
2,206,129 - CA264_09435 0.73 -1.2
2,206,129 - CA264_09435 0.73 +3.0
2,206,253 - CA264_09435 0.81 -0.8
2,206,289 - CA264_09435 0.84 -0.6
2,206,289 - CA264_09435 0.84 -1.1
2,206,289 - CA264_09435 0.84 +0.0
2,206,510 - -0.7
2,206,571 - CA264_09440 0.10 -1.2
2,206,582 + CA264_09440 0.12 -1.0
2,206,583 - CA264_09440 0.12 -1.7
2,206,583 - CA264_09440 0.12 -1.7
2,206,583 - CA264_09440 0.12 -0.6
2,206,584 + CA264_09440 0.12 -0.9
2,206,584 + CA264_09440 0.12 +0.1
2,206,652 + CA264_09440 0.24 -1.6
2,206,703 + CA264_09440 0.32 -2.3
2,206,870 - CA264_09440 0.60 +1.6
2,206,930 + CA264_09440 0.70 -1.5
2,206,935 + CA264_09440 0.71 -0.6
2,206,935 + CA264_09440 0.71 +0.8
2,206,936 - CA264_09440 0.71 -0.6
2,207,003 + CA264_09440 0.82 -0.6
2,207,003 + CA264_09440 0.82 -1.5
2,207,004 - CA264_09440 0.83 -1.3
2,207,078 + -0.3
2,207,106 - -0.6
2,207,338 + CA264_09445 0.22 -1.4
2,207,346 + CA264_09445 0.22 +2.4
2,207,437 + CA264_09445 0.30 +0.4

Or see this region's nucleotide sequence