Experiment: m.b. Nalidixic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07200 and CA264_07205 are separated by 32 nucleotides CA264_07205 and CA264_07210 are separated by 193 nucleotides CA264_07210 and CA264_07215 are separated by 74 nucleotides
CA264_07200: CA264_07200 - glutamate dehydrogenase, at 1,663,220 to 1,664,644
_07200
CA264_07205: CA264_07205 - hypothetical protein, at 1,664,677 to 1,665,123
_07205
CA264_07210: CA264_07210 - SIMPL domain-containing protein, at 1,665,317 to 1,666,045
_07210
CA264_07215: CA264_07215 - peptidase M61, at 1,666,120 to 1,667,823
_07215
Position (kb)
1665
1666
1667 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1664.391 kb on - strand, within CA264_07200 at 1664.534 kb on - strand at 1664.537 kb on - strand at 1664.562 kb on + strand at 1664.618 kb on + strand at 1664.618 kb on + strand at 1664.618 kb on + strand at 1664.667 kb on + strand at 1664.762 kb on + strand, within CA264_07205 at 1664.898 kb on - strand, within CA264_07205 at 1664.900 kb on + strand, within CA264_07205 at 1664.901 kb on - strand, within CA264_07205 at 1664.988 kb on + strand, within CA264_07205 at 1664.989 kb on - strand, within CA264_07205 at 1665.065 kb on - strand, within CA264_07205 at 1665.096 kb on + strand at 1665.116 kb on - strand at 1665.167 kb on - strand at 1665.185 kb on + strand at 1665.250 kb on + strand at 1665.251 kb on - strand at 1665.263 kb on - strand at 1665.263 kb on - strand at 1665.264 kb on + strand at 1665.265 kb on - strand at 1665.283 kb on + strand at 1665.283 kb on + strand at 1665.284 kb on - strand at 1665.367 kb on + strand at 1665.369 kb on + strand at 1665.370 kb on - strand at 1665.430 kb on + strand, within CA264_07210 at 1665.459 kb on + strand, within CA264_07210 at 1665.459 kb on + strand, within CA264_07210 at 1665.459 kb on + strand, within CA264_07210 at 1665.459 kb on + strand, within CA264_07210 at 1665.460 kb on - strand, within CA264_07210 at 1665.492 kb on + strand, within CA264_07210 at 1665.525 kb on - strand, within CA264_07210 at 1665.525 kb on - strand, within CA264_07210 at 1665.551 kb on - strand, within CA264_07210 at 1665.556 kb on - strand, within CA264_07210 at 1665.556 kb on - strand, within CA264_07210 at 1665.563 kb on + strand, within CA264_07210 at 1665.564 kb on - strand, within CA264_07210 at 1665.564 kb on - strand, within CA264_07210 at 1665.597 kb on + strand, within CA264_07210 at 1665.597 kb on + strand, within CA264_07210 at 1665.630 kb on - strand, within CA264_07210 at 1665.650 kb on + strand, within CA264_07210 at 1665.675 kb on - strand, within CA264_07210 at 1665.675 kb on - strand, within CA264_07210 at 1665.699 kb on + strand, within CA264_07210 at 1665.699 kb on + strand, within CA264_07210 at 1665.723 kb on + strand, within CA264_07210 at 1665.757 kb on + strand, within CA264_07210 at 1665.773 kb on - strand, within CA264_07210 at 1665.780 kb on + strand, within CA264_07210 at 1665.781 kb on - strand, within CA264_07210 at 1665.781 kb on - strand, within CA264_07210 at 1665.797 kb on + strand, within CA264_07210 at 1665.797 kb on + strand, within CA264_07210 at 1665.798 kb on - strand, within CA264_07210 at 1665.798 kb on - strand, within CA264_07210 at 1665.800 kb on + strand, within CA264_07210 at 1665.831 kb on + strand, within CA264_07210 at 1666.044 kb on - strand at 1666.103 kb on + strand at 1666.210 kb on - strand at 1666.267 kb on + strand at 1666.302 kb on + strand, within CA264_07215 at 1666.302 kb on + strand, within CA264_07215 at 1666.437 kb on + strand, within CA264_07215 at 1666.437 kb on + strand, within CA264_07215 at 1666.438 kb on - strand, within CA264_07215 at 1666.438 kb on - strand, within CA264_07215 at 1666.508 kb on + strand, within CA264_07215 at 1666.517 kb on + strand, within CA264_07215 at 1666.544 kb on + strand, within CA264_07215 at 1666.544 kb on + strand, within CA264_07215 at 1666.545 kb on - strand, within CA264_07215 at 1666.545 kb on - strand, within CA264_07215 at 1666.545 kb on - strand, within CA264_07215 at 1666.545 kb on - strand, within CA264_07215 at 1666.545 kb on - strand, within CA264_07215 at 1666.599 kb on + strand, within CA264_07215 at 1666.614 kb on + strand, within CA264_07215 at 1666.649 kb on + strand, within CA264_07215 at 1666.649 kb on + strand, within CA264_07215 at 1666.655 kb on + strand, within CA264_07215 at 1666.655 kb on + strand, within CA264_07215 at 1666.656 kb on - strand, within CA264_07215 at 1666.745 kb on + strand, within CA264_07215 at 1666.746 kb on - strand, within CA264_07215 at 1666.746 kb on - strand, within CA264_07215 at 1666.746 kb on - strand, within CA264_07215 at 1666.746 kb on - strand, within CA264_07215 at 1666.746 kb on - strand, within CA264_07215 at 1666.748 kb on + strand, within CA264_07215 at 1666.748 kb on + strand, within CA264_07215 at 1666.749 kb on - strand, within CA264_07215 at 1666.753 kb on + strand, within CA264_07215 at 1666.791 kb on - strand, within CA264_07215 at 1666.812 kb on + strand, within CA264_07215 at 1666.836 kb on + strand, within CA264_07215 at 1666.889 kb on + strand, within CA264_07215 at 1666.889 kb on + strand, within CA264_07215 at 1666.905 kb on + strand, within CA264_07215 at 1666.905 kb on + strand, within CA264_07215 at 1666.906 kb on - strand, within CA264_07215 at 1666.937 kb on + strand, within CA264_07215 at 1666.937 kb on + strand, within CA264_07215 at 1666.938 kb on - strand, within CA264_07215 at 1666.940 kb on + strand, within CA264_07215 at 1666.941 kb on - strand, within CA264_07215 at 1666.979 kb on + strand, within CA264_07215 at 1666.980 kb on - strand, within CA264_07215 at 1666.980 kb on - strand, within CA264_07215 at 1666.995 kb on - strand, within CA264_07215 at 1667.041 kb on + strand, within CA264_07215
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml remove 1,664,391 - CA264_07200 0.82 +0.3 1,664,534 - +0.5 1,664,537 - -1.6 1,664,562 + -0.1 1,664,618 + +0.1 1,664,618 + +0.2 1,664,618 + -1.5 1,664,667 + -0.4 1,664,762 + CA264_07205 0.19 +0.5 1,664,898 - CA264_07205 0.49 -1.1 1,664,900 + CA264_07205 0.50 -1.9 1,664,901 - CA264_07205 0.50 -1.3 1,664,988 + CA264_07205 0.70 -0.3 1,664,989 - CA264_07205 0.70 -1.9 1,665,065 - CA264_07205 0.87 -1.0 1,665,096 + +0.2 1,665,116 - -1.0 1,665,167 - -1.8 1,665,185 + -0.9 1,665,250 + -0.0 1,665,251 - +0.7 1,665,263 - -1.1 1,665,263 - +2.4 1,665,264 + +0.6 1,665,265 - +2.9 1,665,283 + -0.7 1,665,283 + -0.4 1,665,284 - +0.8 1,665,367 + -0.5 1,665,369 + -1.5 1,665,370 - -0.7 1,665,430 + CA264_07210 0.16 -1.0 1,665,459 + CA264_07210 0.19 -0.6 1,665,459 + CA264_07210 0.19 +3.8 1,665,459 + CA264_07210 0.19 +1.0 1,665,459 + CA264_07210 0.19 -0.7 1,665,460 - CA264_07210 0.20 -2.1 1,665,492 + CA264_07210 0.24 +0.9 1,665,525 - CA264_07210 0.29 -1.9 1,665,525 - CA264_07210 0.29 +0.2 1,665,551 - CA264_07210 0.32 +1.0 1,665,556 - CA264_07210 0.33 -0.0 1,665,556 - CA264_07210 0.33 -1.2 1,665,563 + CA264_07210 0.34 +0.0 1,665,564 - CA264_07210 0.34 -0.5 1,665,564 - CA264_07210 0.34 -0.9 1,665,597 + CA264_07210 0.38 -0.1 1,665,597 + CA264_07210 0.38 -0.9 1,665,630 - CA264_07210 0.43 +0.6 1,665,650 + CA264_07210 0.46 -1.2 1,665,675 - CA264_07210 0.49 +0.0 1,665,675 - CA264_07210 0.49 +0.5 1,665,699 + CA264_07210 0.52 -1.3 1,665,699 + CA264_07210 0.52 -0.9 1,665,723 + CA264_07210 0.56 +1.0 1,665,757 + CA264_07210 0.60 +0.7 1,665,773 - CA264_07210 0.63 -0.9 1,665,780 + CA264_07210 0.64 -1.1 1,665,781 - CA264_07210 0.64 +0.3 1,665,781 - CA264_07210 0.64 -1.7 1,665,797 + CA264_07210 0.66 +1.2 1,665,797 + CA264_07210 0.66 -1.3 1,665,798 - CA264_07210 0.66 -0.3 1,665,798 - CA264_07210 0.66 +0.5 1,665,800 + CA264_07210 0.66 -0.0 1,665,831 + CA264_07210 0.71 -1.9 1,666,044 - -1.4 1,666,103 + +0.1 1,666,210 - -1.1 1,666,267 + -1.0 1,666,302 + CA264_07215 0.11 -1.8 1,666,302 + CA264_07215 0.11 +1.2 1,666,437 + CA264_07215 0.19 -1.2 1,666,437 + CA264_07215 0.19 -2.3 1,666,438 - CA264_07215 0.19 -0.4 1,666,438 - CA264_07215 0.19 +0.5 1,666,508 + CA264_07215 0.23 +1.2 1,666,517 + CA264_07215 0.23 +0.3 1,666,544 + CA264_07215 0.25 +0.4 1,666,544 + CA264_07215 0.25 -2.3 1,666,545 - CA264_07215 0.25 -0.7 1,666,545 - CA264_07215 0.25 -0.1 1,666,545 - CA264_07215 0.25 -0.7 1,666,545 - CA264_07215 0.25 -1.0 1,666,545 - CA264_07215 0.25 -1.5 1,666,599 + CA264_07215 0.28 -0.8 1,666,614 + CA264_07215 0.29 +1.3 1,666,649 + CA264_07215 0.31 -0.9 1,666,649 + CA264_07215 0.31 +0.3 1,666,655 + CA264_07215 0.31 +0.1 1,666,655 + CA264_07215 0.31 +1.7 1,666,656 - CA264_07215 0.31 -0.3 1,666,745 + CA264_07215 0.37 -1.3 1,666,746 - CA264_07215 0.37 -0.4 1,666,746 - CA264_07215 0.37 +1.1 1,666,746 - CA264_07215 0.37 +0.1 1,666,746 - CA264_07215 0.37 -1.6 1,666,746 - CA264_07215 0.37 +0.1 1,666,748 + CA264_07215 0.37 -1.3 1,666,748 + CA264_07215 0.37 -1.0 1,666,749 - CA264_07215 0.37 -0.9 1,666,753 + CA264_07215 0.37 -0.5 1,666,791 - CA264_07215 0.39 -0.3 1,666,812 + CA264_07215 0.41 +2.3 1,666,836 + CA264_07215 0.42 -2.2 1,666,889 + CA264_07215 0.45 -1.7 1,666,889 + CA264_07215 0.45 -0.3 1,666,905 + CA264_07215 0.46 -0.0 1,666,905 + CA264_07215 0.46 +1.2 1,666,906 - CA264_07215 0.46 +2.2 1,666,937 + CA264_07215 0.48 -1.6 1,666,937 + CA264_07215 0.48 -0.7 1,666,938 - CA264_07215 0.48 -0.5 1,666,940 + CA264_07215 0.48 +1.6 1,666,941 - CA264_07215 0.48 +1.4 1,666,979 + CA264_07215 0.50 +1.2 1,666,980 - CA264_07215 0.50 -0.3 1,666,980 - CA264_07215 0.50 +0.3 1,666,995 - CA264_07215 0.51 +1.6 1,667,041 + CA264_07215 0.54 -1.4
Or see this region's nucleotide sequence