Experiment: m.b. Nalidixic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06025 and CA264_06030 are separated by 157 nucleotides CA264_06030 and CA264_06035 are separated by 82 nucleotides CA264_06035 and CA264_06040 are separated by 437 nucleotides
CA264_06025: CA264_06025 - cysteine methyltransferase, at 1,406,177 to 1,407,049
_06025
CA264_06030: CA264_06030 - cell envelope biogenesis protein OmpA, at 1,407,207 to 1,408,085
_06030
CA264_06035: CA264_06035 - hypothetical protein, at 1,408,168 to 1,408,626
_06035
CA264_06040: CA264_06040 - hypothetical protein, at 1,409,064 to 1,411,847
_06040
Position (kb)
1407
1408
1409 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1406.213 kb on + strand at 1406.214 kb on - strand at 1406.342 kb on + strand, within CA264_06025 at 1406.342 kb on + strand, within CA264_06025 at 1406.513 kb on + strand, within CA264_06025 at 1406.513 kb on + strand, within CA264_06025 at 1406.514 kb on - strand, within CA264_06025 at 1406.514 kb on - strand, within CA264_06025 at 1406.515 kb on + strand, within CA264_06025 at 1406.515 kb on + strand, within CA264_06025 at 1406.515 kb on + strand, within CA264_06025 at 1406.516 kb on - strand, within CA264_06025 at 1406.543 kb on + strand, within CA264_06025 at 1406.543 kb on + strand, within CA264_06025 at 1406.543 kb on + strand, within CA264_06025 at 1406.544 kb on - strand, within CA264_06025 at 1406.544 kb on - strand, within CA264_06025 at 1406.619 kb on + strand, within CA264_06025 at 1406.783 kb on - strand, within CA264_06025 at 1406.807 kb on + strand, within CA264_06025 at 1406.808 kb on - strand, within CA264_06025 at 1406.911 kb on + strand, within CA264_06025 at 1406.914 kb on - strand, within CA264_06025 at 1407.047 kb on + strand at 1407.054 kb on + strand at 1407.055 kb on - strand at 1407.055 kb on - strand at 1407.091 kb on + strand at 1407.113 kb on - strand at 1407.117 kb on - strand at 1407.200 kb on + strand at 1407.201 kb on - strand at 1407.206 kb on + strand at 1407.206 kb on + strand at 1407.207 kb on - strand at 1407.224 kb on - strand at 1407.291 kb on + strand at 1407.291 kb on + strand at 1407.353 kb on + strand, within CA264_06030 at 1407.353 kb on + strand, within CA264_06030 at 1407.354 kb on - strand, within CA264_06030 at 1407.691 kb on + strand, within CA264_06030 at 1407.691 kb on + strand, within CA264_06030 at 1407.691 kb on + strand, within CA264_06030 at 1407.692 kb on - strand, within CA264_06030 at 1407.693 kb on + strand, within CA264_06030 at 1407.693 kb on + strand, within CA264_06030 at 1407.694 kb on - strand, within CA264_06030 at 1407.694 kb on - strand, within CA264_06030 at 1407.935 kb on - strand, within CA264_06030 at 1407.972 kb on + strand, within CA264_06030 at 1407.972 kb on + strand, within CA264_06030 at 1408.094 kb on + strand at 1408.095 kb on - strand at 1408.104 kb on - strand at 1408.169 kb on + strand at 1408.186 kb on + strand at 1408.192 kb on + strand at 1408.223 kb on - strand, within CA264_06035 at 1408.271 kb on + strand, within CA264_06035 at 1408.271 kb on + strand, within CA264_06035 at 1408.277 kb on - strand, within CA264_06035 at 1408.462 kb on + strand, within CA264_06035 at 1408.462 kb on + strand, within CA264_06035 at 1408.543 kb on + strand, within CA264_06035 at 1408.543 kb on + strand, within CA264_06035 at 1408.544 kb on - strand, within CA264_06035 at 1408.684 kb on + strand at 1408.722 kb on + strand at 1408.722 kb on + strand at 1408.723 kb on - strand at 1408.723 kb on - strand at 1408.800 kb on - strand at 1408.805 kb on + strand at 1408.829 kb on - strand at 1408.853 kb on + strand at 1408.853 kb on + strand at 1408.880 kb on - strand at 1408.939 kb on - strand at 1408.995 kb on - strand at 1409.041 kb on + strand at 1409.046 kb on + strand at 1409.046 kb on + strand at 1409.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml remove 1,406,213 + +0.1 1,406,214 - +1.4 1,406,342 + CA264_06025 0.19 -0.8 1,406,342 + CA264_06025 0.19 +0.6 1,406,513 + CA264_06025 0.38 -1.4 1,406,513 + CA264_06025 0.38 +0.2 1,406,514 - CA264_06025 0.39 -1.5 1,406,514 - CA264_06025 0.39 +0.2 1,406,515 + CA264_06025 0.39 +1.2 1,406,515 + CA264_06025 0.39 +0.6 1,406,515 + CA264_06025 0.39 -1.2 1,406,516 - CA264_06025 0.39 +2.4 1,406,543 + CA264_06025 0.42 -1.4 1,406,543 + CA264_06025 0.42 -0.7 1,406,543 + CA264_06025 0.42 +2.6 1,406,544 - CA264_06025 0.42 +0.0 1,406,544 - CA264_06025 0.42 -1.3 1,406,619 + CA264_06025 0.51 -0.2 1,406,783 - CA264_06025 0.69 -0.2 1,406,807 + CA264_06025 0.72 -1.0 1,406,808 - CA264_06025 0.72 -1.0 1,406,911 + CA264_06025 0.84 +1.0 1,406,914 - CA264_06025 0.84 -0.1 1,407,047 + +0.0 1,407,054 + +1.0 1,407,055 - -0.9 1,407,055 - -2.6 1,407,091 + +0.5 1,407,113 - +0.4 1,407,117 - +1.4 1,407,200 + -0.8 1,407,201 - -0.0 1,407,206 + -0.7 1,407,206 + +0.0 1,407,207 - -0.1 1,407,224 - +1.0 1,407,291 + -3.4 1,407,291 + +3.0 1,407,353 + CA264_06030 0.17 +1.0 1,407,353 + CA264_06030 0.17 +0.9 1,407,354 - CA264_06030 0.17 +0.5 1,407,691 + CA264_06030 0.55 -2.5 1,407,691 + CA264_06030 0.55 -1.1 1,407,691 + CA264_06030 0.55 +1.7 1,407,692 - CA264_06030 0.55 -1.1 1,407,693 + CA264_06030 0.55 +0.6 1,407,693 + CA264_06030 0.55 -2.3 1,407,694 - CA264_06030 0.55 +1.0 1,407,694 - CA264_06030 0.55 -0.3 1,407,935 - CA264_06030 0.83 -0.9 1,407,972 + CA264_06030 0.87 -0.5 1,407,972 + CA264_06030 0.87 +0.2 1,408,094 + -2.4 1,408,095 - -1.6 1,408,104 - -1.2 1,408,169 + +0.2 1,408,186 + -1.2 1,408,192 + -1.1 1,408,223 - CA264_06035 0.12 -0.6 1,408,271 + CA264_06035 0.22 +0.3 1,408,271 + CA264_06035 0.22 +0.0 1,408,277 - CA264_06035 0.24 +0.6 1,408,462 + CA264_06035 0.64 -1.3 1,408,462 + CA264_06035 0.64 -1.3 1,408,543 + CA264_06035 0.82 +0.3 1,408,543 + CA264_06035 0.82 +1.6 1,408,544 - CA264_06035 0.82 -0.8 1,408,684 + +2.3 1,408,722 + -1.4 1,408,722 + -0.8 1,408,723 - -0.2 1,408,723 - -0.1 1,408,800 - +0.9 1,408,805 + -1.9 1,408,829 - -0.4 1,408,853 + -0.6 1,408,853 + -0.3 1,408,880 - +0.7 1,408,939 - +1.8 1,408,995 - -0.9 1,409,041 + +0.9 1,409,046 + -0.7 1,409,046 + -0.9 1,409,048 + -0.2
Or see this region's nucleotide sequence