Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05280

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05275 and CA264_05280 are separated by 161 nucleotidesCA264_05280 and CA264_05285 are separated by 78 nucleotides CA264_05275: CA264_05275 - MFS transporter, at 1,223,209 to 1,224,657 _05275 CA264_05280: CA264_05280 - hypothetical protein, at 1,224,819 to 1,225,421 _05280 CA264_05285: CA264_05285 - molecular chaperone GroEL, at 1,225,500 to 1,227,134 _05285 Position (kb) 1224 1225 1226Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1224.452 kb on - strand, within CA264_05275at 1224.526 kb on - strandat 1224.822 kb on + strandat 1224.896 kb on - strand, within CA264_05280at 1224.945 kb on + strand, within CA264_05280at 1224.945 kb on + strand, within CA264_05280at 1224.947 kb on + strand, within CA264_05280at 1224.948 kb on - strand, within CA264_05280at 1225.049 kb on + strand, within CA264_05280at 1225.182 kb on + strand, within CA264_05280at 1225.184 kb on + strand, within CA264_05280at 1225.184 kb on + strand, within CA264_05280at 1225.184 kb on + strand, within CA264_05280at 1225.188 kb on + strand, within CA264_05280at 1225.189 kb on - strand, within CA264_05280at 1225.209 kb on + strand, within CA264_05280at 1225.211 kb on + strand, within CA264_05280at 1225.211 kb on + strand, within CA264_05280at 1225.212 kb on - strand, within CA264_05280at 1225.216 kb on + strand, within CA264_05280at 1225.216 kb on + strand, within CA264_05280at 1225.217 kb on - strand, within CA264_05280at 1225.400 kb on - strandat 1225.400 kb on - strandat 1225.425 kb on + strandat 1225.426 kb on - strandat 1225.430 kb on + strandat 1225.431 kb on - strandat 1225.462 kb on + strandat 1225.463 kb on - strandat 1225.501 kb on + strandat 1225.502 kb on - strandat 1225.502 kb on - strandat 1225.539 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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1,224,452 - CA264_05275 0.86 +0.5
1,224,526 - +0.5
1,224,822 + -4.6
1,224,896 - CA264_05280 0.13 -2.0
1,224,945 + CA264_05280 0.21 -2.9
1,224,945 + CA264_05280 0.21 -1.8
1,224,947 + CA264_05280 0.21 -0.6
1,224,948 - CA264_05280 0.21 -2.7
1,225,049 + CA264_05280 0.38 -1.9
1,225,182 + CA264_05280 0.60 +0.3
1,225,184 + CA264_05280 0.61 +0.6
1,225,184 + CA264_05280 0.61 +0.4
1,225,184 + CA264_05280 0.61 +1.6
1,225,188 + CA264_05280 0.61 -0.4
1,225,189 - CA264_05280 0.61 +0.7
1,225,209 + CA264_05280 0.65 +0.6
1,225,211 + CA264_05280 0.65 -0.1
1,225,211 + CA264_05280 0.65 -2.1
1,225,212 - CA264_05280 0.65 -0.5
1,225,216 + CA264_05280 0.66 +0.2
1,225,216 + CA264_05280 0.66 -1.0
1,225,217 - CA264_05280 0.66 -1.8
1,225,400 - -1.2
1,225,400 - -1.5
1,225,425 + -0.7
1,225,426 - -2.5
1,225,430 + -0.3
1,225,431 - +2.2
1,225,462 + -0.2
1,225,463 - -3.0
1,225,501 + +1.2
1,225,502 - -1.4
1,225,502 - +0.0
1,225,539 - -1.3

Or see this region's nucleotide sequence