Experiment: m.b. Nalidixic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04145 and CA264_04150 are separated by 171 nucleotides CA264_04150 and CA264_04155 are separated by 235 nucleotides CA264_04155 and CA264_04160 are separated by 6 nucleotides CA264_04160 and CA264_04165 are separated by 263 nucleotides
CA264_04145: CA264_04145 - hypothetical protein, at 959,134 to 959,526
_04145
CA264_04150: CA264_04150 - hypothetical protein, at 959,698 to 959,985
_04150
CA264_04155: CA264_04155 - hypothetical protein, at 960,221 to 960,670
_04155
CA264_04160: CA264_04160 - hypothetical protein, at 960,677 to 960,901
_04160
CA264_04165: CA264_04165 - isoaspartyl peptidase/L-asparaginase, at 961,165 to 962,079
_04165
Position (kb) 960
961 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 959.276 kb on + strand, within CA264_04145 at 959.285 kb on + strand, within CA264_04145 at 959.298 kb on - strand, within CA264_04145 at 959.298 kb on - strand, within CA264_04145 at 959.337 kb on - strand, within CA264_04145 at 959.399 kb on - strand, within CA264_04145 at 959.431 kb on + strand, within CA264_04145 at 959.432 kb on - strand, within CA264_04145 at 959.637 kb on + strand at 959.638 kb on - strand at 959.683 kb on + strand at 959.688 kb on - strand at 959.804 kb on + strand, within CA264_04150 at 959.876 kb on + strand, within CA264_04150 at 959.877 kb on - strand, within CA264_04150 at 959.877 kb on - strand, within CA264_04150 at 960.047 kb on + strand at 960.047 kb on + strand at 960.078 kb on - strand at 960.081 kb on - strand at 960.125 kb on + strand at 960.125 kb on + strand at 960.126 kb on - strand at 960.193 kb on + strand at 960.217 kb on - strand at 960.217 kb on - strand at 960.266 kb on + strand, within CA264_04155 at 960.299 kb on + strand, within CA264_04155 at 960.339 kb on + strand, within CA264_04155 at 960.339 kb on + strand, within CA264_04155 at 960.394 kb on + strand, within CA264_04155 at 960.395 kb on - strand, within CA264_04155 at 960.439 kb on + strand, within CA264_04155 at 960.439 kb on + strand, within CA264_04155 at 960.440 kb on - strand, within CA264_04155 at 960.440 kb on - strand, within CA264_04155 at 960.471 kb on - strand, within CA264_04155 at 960.621 kb on - strand, within CA264_04155 at 960.685 kb on - strand at 960.691 kb on - strand at 960.724 kb on + strand, within CA264_04160 at 960.728 kb on + strand, within CA264_04160 at 960.728 kb on + strand, within CA264_04160 at 960.728 kb on + strand, within CA264_04160 at 960.729 kb on - strand, within CA264_04160 at 960.729 kb on - strand, within CA264_04160 at 960.872 kb on + strand, within CA264_04160 at 960.873 kb on - strand, within CA264_04160 at 960.873 kb on - strand, within CA264_04160 at 960.877 kb on - strand, within CA264_04160 at 960.877 kb on - strand, within CA264_04160 at 960.877 kb on - strand, within CA264_04160 at 960.911 kb on - strand at 960.912 kb on + strand at 960.913 kb on - strand at 960.918 kb on + strand at 960.918 kb on + strand at 960.928 kb on + strand at 960.928 kb on + strand at 961.040 kb on - strand at 961.166 kb on + strand at 961.167 kb on - strand at 961.170 kb on + strand at 961.171 kb on - strand at 961.221 kb on - strand at 961.283 kb on - strand, within CA264_04165 at 961.283 kb on - strand, within CA264_04165 at 961.380 kb on - strand, within CA264_04165 at 961.381 kb on + strand, within CA264_04165 at 961.445 kb on + strand, within CA264_04165 at 961.461 kb on - strand, within CA264_04165 at 961.504 kb on + strand, within CA264_04165 at 961.505 kb on - strand, within CA264_04165 at 961.611 kb on - strand, within CA264_04165 at 961.630 kb on - strand, within CA264_04165
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml remove 959,276 + CA264_04145 0.36 +1.5 959,285 + CA264_04145 0.38 +0.7 959,298 - CA264_04145 0.42 +0.7 959,298 - CA264_04145 0.42 -0.5 959,337 - CA264_04145 0.52 +1.0 959,399 - CA264_04145 0.67 -0.2 959,431 + CA264_04145 0.76 -1.2 959,432 - CA264_04145 0.76 +0.3 959,637 + -1.4 959,638 - +0.5 959,683 + -1.0 959,688 - -1.0 959,804 + CA264_04150 0.37 -0.2 959,876 + CA264_04150 0.62 +0.1 959,877 - CA264_04150 0.62 -0.5 959,877 - CA264_04150 0.62 -1.5 960,047 + -0.4 960,047 + -0.0 960,078 - -2.1 960,081 - +0.7 960,125 + -1.9 960,125 + -2.8 960,126 - +0.0 960,193 + -2.5 960,217 - +1.2 960,217 - -1.4 960,266 + CA264_04155 0.10 +0.6 960,299 + CA264_04155 0.17 -0.3 960,339 + CA264_04155 0.26 -1.0 960,339 + CA264_04155 0.26 +0.3 960,394 + CA264_04155 0.38 +0.2 960,395 - CA264_04155 0.39 +0.6 960,439 + CA264_04155 0.48 -1.6 960,439 + CA264_04155 0.48 +0.7 960,440 - CA264_04155 0.49 -0.1 960,440 - CA264_04155 0.49 -1.3 960,471 - CA264_04155 0.56 +1.1 960,621 - CA264_04155 0.89 +0.6 960,685 - -0.3 960,691 - -2.6 960,724 + CA264_04160 0.21 -0.6 960,728 + CA264_04160 0.23 +1.5 960,728 + CA264_04160 0.23 -0.9 960,728 + CA264_04160 0.23 +0.7 960,729 - CA264_04160 0.23 -0.8 960,729 - CA264_04160 0.23 +0.2 960,872 + CA264_04160 0.87 -1.1 960,873 - CA264_04160 0.87 -2.5 960,873 - CA264_04160 0.87 -1.0 960,877 - CA264_04160 0.89 -1.0 960,877 - CA264_04160 0.89 +0.7 960,877 - CA264_04160 0.89 -2.3 960,911 - -1.0 960,912 + -0.8 960,913 - -0.2 960,918 + -1.2 960,918 + +1.0 960,928 + -0.8 960,928 + +1.9 961,040 - +1.5 961,166 + +0.3 961,167 - +0.9 961,170 + +0.4 961,171 - -0.6 961,221 - +1.5 961,283 - CA264_04165 0.13 +1.0 961,283 - CA264_04165 0.13 +0.5 961,380 - CA264_04165 0.23 -0.1 961,381 + CA264_04165 0.24 +0.3 961,445 + CA264_04165 0.31 -0.0 961,461 - CA264_04165 0.32 +2.8 961,504 + CA264_04165 0.37 +0.6 961,505 - CA264_04165 0.37 -2.5 961,611 - CA264_04165 0.49 +0.9 961,630 - CA264_04165 0.51 -0.2
Or see this region's nucleotide sequence