Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04130

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04125 and CA264_04130 are separated by 935 nucleotidesCA264_04130 and CA264_04135 are separated by 15 nucleotidesCA264_04135 and CA264_04140 are separated by 60 nucleotides CA264_04125: CA264_04125 - hypothetical protein, at 955,610 to 955,945 _04125 CA264_04130: CA264_04130 - hypothetical protein, at 956,881 to 957,735 _04130 CA264_04135: CA264_04135 - hypothetical protein, at 957,751 to 958,164 _04135 CA264_04140: CA264_04140 - cyanophycinase, at 958,225 to 959,118 _04140 Position (kb) 956 957 958Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 955.943 kb on + strandat 955.944 kb on - strandat 955.944 kb on - strandat 955.989 kb on + strandat 956.024 kb on + strandat 956.025 kb on - strandat 956.101 kb on + strandat 956.102 kb on - strandat 956.105 kb on + strandat 956.105 kb on + strandat 956.123 kb on + strandat 956.123 kb on + strandat 956.123 kb on + strandat 956.123 kb on + strandat 956.124 kb on - strandat 956.124 kb on - strandat 956.168 kb on - strandat 956.173 kb on + strandat 956.173 kb on + strandat 956.174 kb on - strandat 956.174 kb on - strandat 956.174 kb on - strandat 956.191 kb on + strandat 956.191 kb on + strandat 956.192 kb on - strandat 956.219 kb on + strandat 956.240 kb on - strandat 956.345 kb on + strandat 956.422 kb on + strandat 956.423 kb on - strandat 956.496 kb on - strandat 956.504 kb on - strandat 956.507 kb on - strandat 956.520 kb on - strandat 956.527 kb on - strandat 956.527 kb on - strandat 956.573 kb on - strandat 956.625 kb on + strandat 956.625 kb on + strandat 956.625 kb on + strandat 956.625 kb on + strandat 956.626 kb on - strandat 956.626 kb on - strandat 956.627 kb on + strandat 956.627 kb on + strandat 956.627 kb on + strandat 956.628 kb on - strandat 956.628 kb on - strandat 956.628 kb on - strandat 956.668 kb on + strandat 956.693 kb on + strandat 956.698 kb on - strandat 956.698 kb on - strandat 956.715 kb on + strandat 956.715 kb on + strandat 956.716 kb on - strandat 956.721 kb on + strandat 956.770 kb on - strandat 956.770 kb on - strandat 956.852 kb on + strandat 956.858 kb on + strandat 956.922 kb on + strandat 956.929 kb on + strandat 956.978 kb on - strand, within CA264_04130at 956.991 kb on - strand, within CA264_04130at 957.045 kb on + strand, within CA264_04130at 957.050 kb on - strand, within CA264_04130at 957.201 kb on + strand, within CA264_04130at 957.201 kb on + strand, within CA264_04130at 957.208 kb on - strand, within CA264_04130at 957.219 kb on + strand, within CA264_04130at 957.273 kb on + strand, within CA264_04130at 957.353 kb on + strand, within CA264_04130at 957.354 kb on - strand, within CA264_04130at 957.586 kb on + strand, within CA264_04130at 957.591 kb on + strand, within CA264_04130at 957.733 kb on + strandat 957.847 kb on - strand, within CA264_04135at 957.847 kb on - strand, within CA264_04135at 957.848 kb on + strand, within CA264_04135at 957.848 kb on + strand, within CA264_04135at 957.849 kb on - strand, within CA264_04135at 957.849 kb on - strand, within CA264_04135at 957.856 kb on + strand, within CA264_04135at 957.856 kb on + strand, within CA264_04135at 957.875 kb on - strand, within CA264_04135at 957.949 kb on + strand, within CA264_04135at 958.077 kb on + strand, within CA264_04135at 958.078 kb on - strand, within CA264_04135at 958.146 kb on + strandat 958.147 kb on - strandat 958.166 kb on - strandat 958.173 kb on + strandat 958.174 kb on - strandat 958.195 kb on + strandat 958.197 kb on + strandat 958.211 kb on + strandat 958.212 kb on - strandat 958.242 kb on - strandat 958.255 kb on - strandat 958.302 kb on - strandat 958.399 kb on - strand, within CA264_04140at 958.497 kb on - strand, within CA264_04140at 958.568 kb on + strand, within CA264_04140at 958.569 kb on - strand, within CA264_04140at 958.571 kb on + strand, within CA264_04140at 958.670 kb on - strand, within CA264_04140at 958.671 kb on + strand, within CA264_04140at 958.671 kb on + strand, within CA264_04140at 958.672 kb on - strand, within CA264_04140at 958.685 kb on + strand, within CA264_04140at 958.685 kb on + strand, within CA264_04140at 958.686 kb on - strand, within CA264_04140at 958.686 kb on - strand, within CA264_04140

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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955,943 + -1.8
955,944 - +0.7
955,944 - -2.1
955,989 + +1.2
956,024 + -1.5
956,025 - -0.1
956,101 + +0.2
956,102 - +1.0
956,105 + -0.2
956,105 + +0.8
956,123 + +0.6
956,123 + +2.0
956,123 + -1.1
956,123 + -0.6
956,124 - +1.2
956,124 - +4.0
956,168 - +1.2
956,173 + -0.0
956,173 + -0.0
956,174 - -0.2
956,174 - -1.2
956,174 - -1.3
956,191 + +3.0
956,191 + +1.0
956,192 - -1.3
956,219 + +0.6
956,240 - +0.6
956,345 + +0.6
956,422 + -0.9
956,423 - -1.9
956,496 - +0.7
956,504 - +0.0
956,507 - +1.4
956,520 - -1.2
956,527 - +3.2
956,527 - -0.1
956,573 - +0.4
956,625 + -1.6
956,625 + +0.9
956,625 + -1.5
956,625 + -0.4
956,626 - +0.4
956,626 - -2.0
956,627 + -0.6
956,627 + +0.0
956,627 + -1.5
956,628 - -0.2
956,628 - +0.0
956,628 - -2.7
956,668 + +0.6
956,693 + -0.5
956,698 - -0.9
956,698 - -2.2
956,715 + +1.0
956,715 + +0.3
956,716 - +0.5
956,721 + +1.3
956,770 - -1.1
956,770 - -3.1
956,852 + +0.2
956,858 + -0.4
956,922 + -0.4
956,929 + +0.1
956,978 - CA264_04130 0.11 +2.6
956,991 - CA264_04130 0.13 -0.7
957,045 + CA264_04130 0.19 -0.3
957,050 - CA264_04130 0.20 -0.8
957,201 + CA264_04130 0.37 -0.7
957,201 + CA264_04130 0.37 -0.8
957,208 - CA264_04130 0.38 -2.0
957,219 + CA264_04130 0.40 -0.1
957,273 + CA264_04130 0.46 +0.6
957,353 + CA264_04130 0.55 +0.6
957,354 - CA264_04130 0.55 -0.7
957,586 + CA264_04130 0.82 +1.2
957,591 + CA264_04130 0.83 +0.6
957,733 + -2.4
957,847 - CA264_04135 0.23 +0.3
957,847 - CA264_04135 0.23 +0.3
957,848 + CA264_04135 0.23 +0.7
957,848 + CA264_04135 0.23 +0.9
957,849 - CA264_04135 0.24 -0.7
957,849 - CA264_04135 0.24 +0.1
957,856 + CA264_04135 0.25 -0.9
957,856 + CA264_04135 0.25 +1.0
957,875 - CA264_04135 0.30 -0.5
957,949 + CA264_04135 0.48 -1.6
958,077 + CA264_04135 0.79 -0.6
958,078 - CA264_04135 0.79 +0.6
958,146 + +0.3
958,147 - -1.3
958,166 - -0.9
958,173 + -2.1
958,174 - -0.4
958,195 + -0.4
958,197 + -0.4
958,211 + -1.4
958,212 - -1.2
958,242 - +0.6
958,255 - -0.0
958,302 - -0.3
958,399 - CA264_04140 0.19 -0.4
958,497 - CA264_04140 0.30 -0.6
958,568 + CA264_04140 0.38 -1.3
958,569 - CA264_04140 0.38 -0.1
958,571 + CA264_04140 0.39 +1.5
958,670 - CA264_04140 0.50 +0.9
958,671 + CA264_04140 0.50 -0.6
958,671 + CA264_04140 0.50 -1.0
958,672 - CA264_04140 0.50 +1.3
958,685 + CA264_04140 0.51 -3.3
958,685 + CA264_04140 0.51 +1.2
958,686 - CA264_04140 0.52 -0.7
958,686 - CA264_04140 0.52 -0.1

Or see this region's nucleotide sequence