Experiment: m.b. Nalidixic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03550 and CA264_03555 are separated by 187 nucleotides CA264_03555 and CA264_03560 are separated by 370 nucleotides CA264_03560 and CA264_03565 are separated by 271 nucleotides
CA264_03550: CA264_03550 - hypothetical protein, at 827,686 to 828,303
_03550
CA264_03555: CA264_03555 - hypothetical protein, at 828,491 to 828,916
_03555
CA264_03560: CA264_03560 - hypothetical protein, at 829,287 to 829,616
_03560
CA264_03565: CA264_03565 - transposase, at 829,888 to 830,433
_03565
Position (kb) 828
829 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 827.491 kb on - strand at 827.505 kb on - strand at 827.505 kb on - strand at 827.513 kb on + strand at 827.514 kb on - strand at 827.514 kb on - strand at 827.514 kb on - strand at 827.514 kb on - strand at 827.528 kb on + strand at 827.546 kb on - strand at 827.547 kb on + strand at 827.590 kb on - strand at 827.595 kb on - strand at 827.648 kb on - strand at 827.648 kb on - strand at 827.654 kb on + strand at 827.656 kb on + strand at 827.666 kb on + strand at 827.673 kb on + strand at 827.738 kb on - strand at 827.772 kb on + strand, within CA264_03550 at 827.780 kb on - strand, within CA264_03550 at 827.781 kb on + strand, within CA264_03550 at 827.782 kb on - strand, within CA264_03550 at 827.782 kb on - strand, within CA264_03550 at 827.810 kb on + strand, within CA264_03550 at 827.814 kb on - strand, within CA264_03550 at 827.817 kb on + strand, within CA264_03550 at 827.817 kb on + strand, within CA264_03550 at 827.818 kb on - strand, within CA264_03550 at 827.818 kb on - strand, within CA264_03550 at 827.818 kb on - strand, within CA264_03550 at 827.821 kb on - strand, within CA264_03550 at 827.830 kb on - strand, within CA264_03550 at 827.873 kb on - strand, within CA264_03550 at 827.874 kb on + strand, within CA264_03550 at 827.926 kb on - strand, within CA264_03550 at 827.943 kb on + strand, within CA264_03550 at 827.949 kb on + strand, within CA264_03550 at 827.965 kb on - strand, within CA264_03550 at 827.969 kb on - strand, within CA264_03550 at 827.969 kb on - strand, within CA264_03550 at 827.969 kb on - strand, within CA264_03550 at 827.969 kb on - strand, within CA264_03550 at 827.969 kb on - strand, within CA264_03550 at 828.003 kb on + strand, within CA264_03550 at 828.009 kb on - strand, within CA264_03550 at 828.038 kb on + strand, within CA264_03550 at 828.086 kb on - strand, within CA264_03550 at 828.144 kb on - strand, within CA264_03550 at 828.144 kb on - strand, within CA264_03550 at 828.144 kb on - strand, within CA264_03550 at 828.214 kb on + strand, within CA264_03550 at 828.214 kb on + strand, within CA264_03550 at 828.218 kb on - strand, within CA264_03550 at 828.236 kb on - strand, within CA264_03550 at 828.236 kb on - strand, within CA264_03550 at 828.269 kb on + strand at 828.270 kb on - strand at 828.276 kb on + strand at 828.301 kb on + strand at 828.302 kb on - strand at 828.307 kb on + strand at 828.308 kb on - strand at 828.324 kb on + strand at 828.324 kb on + strand at 828.325 kb on - strand at 828.328 kb on + strand at 828.329 kb on - strand at 828.364 kb on - strand at 828.371 kb on - strand at 828.406 kb on + strand at 828.467 kb on + strand at 828.468 kb on - strand at 828.469 kb on + strand at 828.469 kb on + strand at 828.470 kb on - strand at 828.494 kb on + strand at 828.496 kb on + strand at 828.497 kb on - strand at 828.497 kb on - strand at 828.512 kb on - strand at 828.540 kb on + strand, within CA264_03555 at 828.541 kb on - strand, within CA264_03555 at 828.541 kb on - strand, within CA264_03555 at 828.544 kb on + strand, within CA264_03555 at 828.545 kb on - strand, within CA264_03555 at 828.545 kb on - strand, within CA264_03555 at 828.558 kb on + strand, within CA264_03555 at 828.558 kb on + strand, within CA264_03555 at 828.558 kb on + strand, within CA264_03555 at 828.559 kb on - strand, within CA264_03555 at 828.565 kb on + strand, within CA264_03555 at 828.566 kb on - strand, within CA264_03555 at 828.566 kb on - strand, within CA264_03555 at 828.600 kb on - strand, within CA264_03555 at 828.603 kb on + strand, within CA264_03555 at 828.604 kb on - strand, within CA264_03555 at 828.687 kb on - strand, within CA264_03555 at 828.710 kb on + strand, within CA264_03555 at 828.711 kb on - strand, within CA264_03555 at 828.787 kb on + strand, within CA264_03555 at 828.819 kb on - strand, within CA264_03555 at 828.819 kb on - strand, within CA264_03555 at 828.832 kb on - strand, within CA264_03555 at 828.871 kb on - strand, within CA264_03555 at 828.871 kb on - strand, within CA264_03555 at 828.871 kb on - strand, within CA264_03555 at 828.876 kb on - strand at 828.945 kb on - strand at 828.951 kb on + strand at 829.028 kb on - strand at 829.047 kb on + strand at 829.055 kb on + strand at 829.055 kb on + strand at 829.119 kb on + strand at 829.119 kb on + strand at 829.120 kb on - strand at 829.120 kb on - strand at 829.123 kb on - strand at 829.123 kb on - strand at 829.123 kb on - strand at 829.146 kb on + strand at 829.164 kb on + strand at 829.164 kb on + strand at 829.164 kb on + strand at 829.165 kb on - strand at 829.191 kb on + strand at 829.192 kb on - strand at 829.225 kb on + strand at 829.266 kb on - strand at 829.267 kb on + strand at 829.268 kb on - strand at 829.268 kb on - strand at 829.274 kb on - strand at 829.286 kb on - strand at 829.305 kb on + strand at 829.312 kb on + strand at 829.402 kb on + strand, within CA264_03560 at 829.409 kb on + strand, within CA264_03560 at 829.445 kb on - strand, within CA264_03560 at 829.445 kb on - strand, within CA264_03560 at 829.483 kb on + strand, within CA264_03560 at 829.483 kb on + strand, within CA264_03560 at 829.484 kb on - strand, within CA264_03560 at 829.516 kb on + strand, within CA264_03560 at 829.517 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.595 kb on - strand at 829.603 kb on + strand at 829.604 kb on - strand at 829.615 kb on - strand at 829.750 kb on + strand at 829.750 kb on + strand at 829.754 kb on + strand at 829.754 kb on + strand at 829.755 kb on - strand at 829.769 kb on + strand at 829.775 kb on + strand at 829.811 kb on - strand at 829.829 kb on + strand at 829.830 kb on - strand at 829.830 kb on - strand at 829.830 kb on - strand at 829.835 kb on - strand at 829.835 kb on - strand at 829.871 kb on + strand at 829.884 kb on + strand at 829.885 kb on - strand at 829.885 kb on - strand at 829.885 kb on - strand at 829.885 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml remove 827,491 - -0.5 827,505 - -0.3 827,505 - -1.7 827,513 + +0.0 827,514 - -0.0 827,514 - -0.6 827,514 - -0.6 827,514 - +0.9 827,528 + -0.1 827,546 - -1.7 827,547 + -0.1 827,590 - -0.3 827,595 - +0.5 827,648 - -0.2 827,648 - -1.8 827,654 + +0.1 827,656 + -0.8 827,666 + +0.9 827,673 + -2.5 827,738 - -1.9 827,772 + CA264_03550 0.14 +1.9 827,780 - CA264_03550 0.15 -0.6 827,781 + CA264_03550 0.15 -0.8 827,782 - CA264_03550 0.16 +1.6 827,782 - CA264_03550 0.16 -0.6 827,810 + CA264_03550 0.20 -0.3 827,814 - CA264_03550 0.21 +0.0 827,817 + CA264_03550 0.21 -2.7 827,817 + CA264_03550 0.21 -1.6 827,818 - CA264_03550 0.21 -1.5 827,818 - CA264_03550 0.21 +1.1 827,818 - CA264_03550 0.21 -2.3 827,821 - CA264_03550 0.22 +0.0 827,830 - CA264_03550 0.23 +1.3 827,873 - CA264_03550 0.30 +0.5 827,874 + CA264_03550 0.30 -0.9 827,926 - CA264_03550 0.39 +0.7 827,943 + CA264_03550 0.42 +1.9 827,949 + CA264_03550 0.43 +0.8 827,965 - CA264_03550 0.45 +0.9 827,969 - CA264_03550 0.46 -1.5 827,969 - CA264_03550 0.46 -0.0 827,969 - CA264_03550 0.46 +2.9 827,969 - CA264_03550 0.46 -0.4 827,969 - CA264_03550 0.46 -0.7 828,003 + CA264_03550 0.51 +0.3 828,009 - CA264_03550 0.52 +0.9 828,038 + CA264_03550 0.57 +1.6 828,086 - CA264_03550 0.65 -0.2 828,144 - CA264_03550 0.74 -2.3 828,144 - CA264_03550 0.74 -1.2 828,144 - CA264_03550 0.74 +0.3 828,214 + CA264_03550 0.85 -0.3 828,214 + CA264_03550 0.85 -1.0 828,218 - CA264_03550 0.86 -1.9 828,236 - CA264_03550 0.89 -1.6 828,236 - CA264_03550 0.89 -0.7 828,269 + -0.8 828,270 - +1.3 828,276 + +0.7 828,301 + +1.1 828,302 - -1.6 828,307 + +0.1 828,308 - -0.9 828,324 + +0.1 828,324 + +0.3 828,325 - -0.0 828,328 + -0.4 828,329 - +1.2 828,364 - +2.1 828,371 - -0.0 828,406 + +1.9 828,467 + +0.3 828,468 - +1.3 828,469 + +1.9 828,469 + +0.3 828,470 - -0.9 828,494 + -1.3 828,496 + -0.3 828,497 - -0.4 828,497 - +0.3 828,512 - -0.5 828,540 + CA264_03555 0.12 -1.3 828,541 - CA264_03555 0.12 +0.2 828,541 - CA264_03555 0.12 -1.1 828,544 + CA264_03555 0.12 -2.3 828,545 - CA264_03555 0.13 -0.0 828,545 - CA264_03555 0.13 -1.7 828,558 + CA264_03555 0.16 -0.6 828,558 + CA264_03555 0.16 -0.1 828,558 + CA264_03555 0.16 +3.1 828,559 - CA264_03555 0.16 -1.4 828,565 + CA264_03555 0.17 -0.1 828,566 - CA264_03555 0.18 -0.9 828,566 - CA264_03555 0.18 -0.9 828,600 - CA264_03555 0.26 +0.3 828,603 + CA264_03555 0.26 +0.2 828,604 - CA264_03555 0.27 +0.1 828,687 - CA264_03555 0.46 +1.2 828,710 + CA264_03555 0.51 -2.9 828,711 - CA264_03555 0.52 +1.9 828,787 + CA264_03555 0.69 +2.0 828,819 - CA264_03555 0.77 -1.0 828,819 - CA264_03555 0.77 -1.0 828,832 - CA264_03555 0.80 -0.5 828,871 - CA264_03555 0.89 -0.2 828,871 - CA264_03555 0.89 -0.2 828,871 - CA264_03555 0.89 -1.4 828,876 - -0.9 828,945 - -2.0 828,951 + -0.3 829,028 - -0.1 829,047 + -1.0 829,055 + -2.3 829,055 + +0.6 829,119 + +1.6 829,119 + -0.3 829,120 - -1.9 829,120 - -0.5 829,123 - -0.3 829,123 - -0.7 829,123 - +1.8 829,146 + +0.2 829,164 + -3.0 829,164 + +1.1 829,164 + -1.2 829,165 - +0.5 829,191 + +0.2 829,192 - +0.5 829,225 + -1.3 829,266 - -1.2 829,267 + -0.4 829,268 - -1.3 829,268 - -2.6 829,274 - -0.3 829,286 - +1.3 829,305 + +0.2 829,312 + -0.8 829,402 + CA264_03560 0.35 +2.8 829,409 + CA264_03560 0.37 -0.7 829,445 - CA264_03560 0.48 -0.7 829,445 - CA264_03560 0.48 -0.2 829,483 + CA264_03560 0.59 +0.6 829,483 + CA264_03560 0.59 -1.4 829,484 - CA264_03560 0.60 -0.6 829,516 + CA264_03560 0.69 -0.2 829,517 - CA264_03560 0.70 +0.4 829,580 - CA264_03560 0.89 -0.4 829,580 - CA264_03560 0.89 -1.4 829,580 - CA264_03560 0.89 -0.9 829,580 - CA264_03560 0.89 +1.4 829,580 - CA264_03560 0.89 -2.0 829,595 - -0.3 829,603 + +0.5 829,604 - -0.3 829,615 - -0.7 829,750 + -2.2 829,750 + -0.1 829,754 + +0.9 829,754 + -1.8 829,755 - -1.4 829,769 + +1.4 829,775 + -0.1 829,811 - +0.6 829,829 + +0.3 829,830 - +1.2 829,830 - -1.8 829,830 - -0.3 829,835 - -0.8 829,835 - -0.5 829,871 + +0.2 829,884 + +0.9 829,885 - -1.5 829,885 - -0.2 829,885 - +0.4 829,885 - +0.7
Or see this region's nucleotide sequence