Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03085

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03080 and CA264_03085 are separated by 4 nucleotidesCA264_03085 and CA264_03090 are separated by 348 nucleotides CA264_03080: CA264_03080 - hypothetical protein, at 717,912 to 720,284 _03080 CA264_03085: CA264_03085 - polysaccharide transporter, at 720,289 to 721,053 _03085 CA264_03090: CA264_03090 - hypothetical protein, at 721,402 to 721,617 _03090 Position (kb) 720 721 722Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 719.297 kb on - strand, within CA264_03080at 719.410 kb on - strand, within CA264_03080at 719.468 kb on - strand, within CA264_03080at 719.468 kb on - strand, within CA264_03080at 719.556 kb on + strand, within CA264_03080at 719.556 kb on + strand, within CA264_03080at 719.558 kb on + strand, within CA264_03080at 719.558 kb on + strand, within CA264_03080at 719.559 kb on - strand, within CA264_03080at 719.559 kb on - strand, within CA264_03080at 719.559 kb on - strand, within CA264_03080at 719.559 kb on - strand, within CA264_03080at 719.593 kb on - strand, within CA264_03080at 719.626 kb on + strand, within CA264_03080at 719.626 kb on + strand, within CA264_03080at 719.797 kb on - strand, within CA264_03080at 719.809 kb on + strand, within CA264_03080at 719.810 kb on - strand, within CA264_03080at 719.838 kb on - strand, within CA264_03080at 719.887 kb on + strand, within CA264_03080at 719.888 kb on - strand, within CA264_03080at 719.952 kb on + strand, within CA264_03080at 719.952 kb on + strand, within CA264_03080at 719.953 kb on - strand, within CA264_03080at 719.953 kb on - strand, within CA264_03080at 719.959 kb on + strand, within CA264_03080at 719.960 kb on - strand, within CA264_03080at 720.044 kb on + strand, within CA264_03080at 720.045 kb on - strand, within CA264_03080at 720.136 kb on + strandat 720.162 kb on + strandat 720.162 kb on + strandat 720.166 kb on + strandat 720.167 kb on - strandat 720.173 kb on - strandat 720.173 kb on - strandat 720.189 kb on + strandat 720.190 kb on - strandat 720.250 kb on - strandat 720.256 kb on - strandat 720.321 kb on + strandat 720.346 kb on + strandat 720.347 kb on - strandat 720.396 kb on - strand, within CA264_03085at 720.420 kb on - strand, within CA264_03085at 720.422 kb on + strand, within CA264_03085at 720.422 kb on + strand, within CA264_03085at 720.461 kb on - strand, within CA264_03085at 720.480 kb on + strand, within CA264_03085at 720.497 kb on - strand, within CA264_03085at 720.499 kb on + strand, within CA264_03085at 720.499 kb on + strand, within CA264_03085at 720.508 kb on - strand, within CA264_03085at 720.581 kb on + strand, within CA264_03085at 720.585 kb on + strand, within CA264_03085at 720.585 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.594 kb on - strand, within CA264_03085at 720.594 kb on - strand, within CA264_03085at 720.607 kb on + strand, within CA264_03085at 720.608 kb on - strand, within CA264_03085at 720.637 kb on - strand, within CA264_03085at 720.637 kb on - strand, within CA264_03085at 720.671 kb on + strand, within CA264_03085at 720.728 kb on - strand, within CA264_03085at 720.728 kb on - strand, within CA264_03085at 720.742 kb on + strand, within CA264_03085at 720.742 kb on + strand, within CA264_03085at 720.743 kb on - strand, within CA264_03085at 720.757 kb on + strand, within CA264_03085at 720.782 kb on + strand, within CA264_03085at 720.832 kb on - strand, within CA264_03085at 720.853 kb on - strand, within CA264_03085at 720.853 kb on - strand, within CA264_03085at 720.862 kb on - strand, within CA264_03085at 720.896 kb on - strand, within CA264_03085at 720.918 kb on - strand, within CA264_03085at 720.918 kb on - strand, within CA264_03085at 720.918 kb on - strand, within CA264_03085at 720.918 kb on - strand, within CA264_03085at 720.953 kb on + strand, within CA264_03085at 720.954 kb on - strand, within CA264_03085at 721.018 kb on + strandat 721.095 kb on + strandat 721.096 kb on - strandat 721.130 kb on - strandat 721.133 kb on + strandat 721.138 kb on - strandat 721.160 kb on + strandat 721.166 kb on + strandat 721.167 kb on - strandat 721.168 kb on + strandat 721.170 kb on + strandat 721.389 kb on + strandat 721.447 kb on - strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.486 kb on + strand, within CA264_03090at 721.502 kb on + strand, within CA264_03090at 721.502 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.507 kb on - strand, within CA264_03090at 721.507 kb on - strand, within CA264_03090at 721.509 kb on + strand, within CA264_03090at 721.519 kb on + strand, within CA264_03090at 721.519 kb on + strand, within CA264_03090at 721.524 kb on + strand, within CA264_03090at 721.605 kb on + strandat 721.606 kb on - strandat 721.606 kb on - strandat 721.610 kb on + strandat 721.630 kb on + strandat 721.634 kb on + strandat 721.636 kb on + strandat 721.637 kb on - strandat 721.641 kb on - strandat 721.663 kb on - strandat 721.669 kb on + strandat 721.670 kb on - strandat 721.759 kb on + strandat 721.760 kb on - strandat 721.802 kb on + strandat 721.817 kb on + strandat 721.822 kb on + strandat 721.822 kb on + strandat 721.822 kb on + strandat 721.823 kb on - strandat 721.825 kb on + strandat 721.825 kb on + strandat 721.831 kb on + strandat 721.922 kb on + strandat 721.922 kb on + strandat 721.923 kb on - strandat 721.923 kb on - strandat 722.041 kb on - strandat 722.045 kb on + strandat 722.045 kb on + strandat 722.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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719,297 - CA264_03080 0.58 -1.0
719,410 - CA264_03080 0.63 -0.1
719,468 - CA264_03080 0.66 +0.1
719,468 - CA264_03080 0.66 -0.5
719,556 + CA264_03080 0.69 -1.6
719,556 + CA264_03080 0.69 +0.9
719,558 + CA264_03080 0.69 -0.3
719,558 + CA264_03080 0.69 +1.0
719,559 - CA264_03080 0.69 +0.1
719,559 - CA264_03080 0.69 -3.2
719,559 - CA264_03080 0.69 +1.8
719,559 - CA264_03080 0.69 -2.0
719,593 - CA264_03080 0.71 +2.0
719,626 + CA264_03080 0.72 -0.6
719,626 + CA264_03080 0.72 -1.3
719,797 - CA264_03080 0.79 +1.4
719,809 + CA264_03080 0.80 -2.2
719,810 - CA264_03080 0.80 -0.7
719,838 - CA264_03080 0.81 -0.1
719,887 + CA264_03080 0.83 -1.0
719,888 - CA264_03080 0.83 -1.4
719,952 + CA264_03080 0.86 -0.5
719,952 + CA264_03080 0.86 +0.4
719,953 - CA264_03080 0.86 +1.3
719,953 - CA264_03080 0.86 -0.6
719,959 + CA264_03080 0.86 -0.2
719,960 - CA264_03080 0.86 -0.5
720,044 + CA264_03080 0.90 +1.3
720,045 - CA264_03080 0.90 -1.7
720,136 + -2.1
720,162 + -1.4
720,162 + -0.9
720,166 + -0.2
720,167 - +0.1
720,173 - +0.8
720,173 - -1.6
720,189 + -1.3
720,190 - +0.7
720,250 - -1.2
720,256 - -0.1
720,321 + -2.4
720,346 + -2.1
720,347 - -0.7
720,396 - CA264_03085 0.14 -1.5
720,420 - CA264_03085 0.17 -0.3
720,422 + CA264_03085 0.17 +1.0
720,422 + CA264_03085 0.17 -2.0
720,461 - CA264_03085 0.22 -1.6
720,480 + CA264_03085 0.25 -0.3
720,497 - CA264_03085 0.27 +1.2
720,499 + CA264_03085 0.27 +1.3
720,499 + CA264_03085 0.27 -1.7
720,508 - CA264_03085 0.29 -1.7
720,581 + CA264_03085 0.38 -2.7
720,585 + CA264_03085 0.39 -1.1
720,585 + CA264_03085 0.39 -0.6
720,587 + CA264_03085 0.39 -0.5
720,587 + CA264_03085 0.39 +0.8
720,587 + CA264_03085 0.39 -1.4
720,587 + CA264_03085 0.39 -1.1
720,587 + CA264_03085 0.39 -0.5
720,587 + CA264_03085 0.39 -0.8
720,594 - CA264_03085 0.40 -1.2
720,594 - CA264_03085 0.40 -1.6
720,607 + CA264_03085 0.42 -1.2
720,608 - CA264_03085 0.42 +1.5
720,637 - CA264_03085 0.45 -3.5
720,637 - CA264_03085 0.45 -1.4
720,671 + CA264_03085 0.50 -1.3
720,728 - CA264_03085 0.57 -3.3
720,728 - CA264_03085 0.57 +0.7
720,742 + CA264_03085 0.59 -0.9
720,742 + CA264_03085 0.59 -0.0
720,743 - CA264_03085 0.59 -0.8
720,757 + CA264_03085 0.61 +0.0
720,782 + CA264_03085 0.64 +1.5
720,832 - CA264_03085 0.71 +0.3
720,853 - CA264_03085 0.74 -1.3
720,853 - CA264_03085 0.74 +0.3
720,862 - CA264_03085 0.75 -1.2
720,896 - CA264_03085 0.79 -0.4
720,918 - CA264_03085 0.82 -1.9
720,918 - CA264_03085 0.82 -0.9
720,918 - CA264_03085 0.82 +1.1
720,918 - CA264_03085 0.82 +1.3
720,953 + CA264_03085 0.87 -1.1
720,954 - CA264_03085 0.87 -1.7
721,018 + +1.7
721,095 + +1.3
721,096 - -0.9
721,130 - -1.1
721,133 + -0.2
721,138 - +0.2
721,160 + +0.3
721,166 + -0.9
721,167 - -2.1
721,168 + -0.9
721,170 + -3.0
721,389 + -1.0
721,447 - CA264_03090 0.21 -0.7
721,467 + CA264_03090 0.30 -1.0
721,467 + CA264_03090 0.30 +1.3
721,467 + CA264_03090 0.30 -1.0
721,467 + CA264_03090 0.30 -0.5
721,467 + CA264_03090 0.30 +0.4
721,486 + CA264_03090 0.39 +2.3
721,502 + CA264_03090 0.46 +0.1
721,502 + CA264_03090 0.46 +0.9
721,506 + CA264_03090 0.48 +0.4
721,506 + CA264_03090 0.48 -0.7
721,506 + CA264_03090 0.48 -0.8
721,506 + CA264_03090 0.48 -0.7
721,507 - CA264_03090 0.49 -0.6
721,507 - CA264_03090 0.49 -0.2
721,509 + CA264_03090 0.50 -1.4
721,519 + CA264_03090 0.54 -1.6
721,519 + CA264_03090 0.54 +0.4
721,524 + CA264_03090 0.56 -2.8
721,605 + +1.0
721,606 - -1.4
721,606 - -1.0
721,610 + -0.3
721,630 + +2.2
721,634 + +0.0
721,636 + -0.3
721,637 - -0.3
721,641 - +1.1
721,663 - -0.8
721,669 + -0.8
721,670 - -0.8
721,759 + -1.4
721,760 - -1.9
721,802 + -2.3
721,817 + -0.7
721,822 + -1.5
721,822 + -1.5
721,822 + -0.1
721,823 - -1.3
721,825 + -1.2
721,825 + -1.9
721,831 + -0.0
721,922 + -1.2
721,922 + +1.1
721,923 - +0.2
721,923 - +0.5
722,041 - -0.9
722,045 + +0.4
722,045 + +0.3
722,046 - -0.2

Or see this region's nucleotide sequence