Experiment: m.b. Nalidixic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02380 and CA264_02385 are separated by 212 nucleotides CA264_02385 and CA264_02390 are separated by 72 nucleotides
CA264_02380: CA264_02380 - homoserine dehydrogenase, at 550,252 to 551,511
_02380
CA264_02385: CA264_02385 - hypothetical protein, at 551,724 to 552,410
_02385
CA264_02390: CA264_02390 - diaminopimelate decarboxylase, at 552,483 to 553,625
_02390
Position (kb) 551
552
553 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 550.879 kb on - strand, within CA264_02380 at 550.909 kb on - strand, within CA264_02380 at 550.909 kb on - strand, within CA264_02380 at 550.910 kb on + strand, within CA264_02380 at 550.910 kb on + strand, within CA264_02380 at 550.911 kb on - strand, within CA264_02380 at 550.911 kb on - strand, within CA264_02380 at 550.911 kb on - strand, within CA264_02380 at 551.053 kb on + strand, within CA264_02380 at 551.098 kb on + strand, within CA264_02380 at 551.191 kb on + strand, within CA264_02380 at 551.197 kb on + strand, within CA264_02380 at 551.197 kb on + strand, within CA264_02380 at 551.198 kb on - strand, within CA264_02380 at 551.198 kb on - strand, within CA264_02380 at 551.218 kb on + strand, within CA264_02380 at 551.276 kb on + strand, within CA264_02380 at 551.279 kb on - strand, within CA264_02380 at 551.279 kb on - strand, within CA264_02380 at 551.346 kb on - strand, within CA264_02380 at 551.457 kb on + strand at 551.458 kb on - strand at 551.475 kb on - strand at 551.537 kb on - strand at 551.564 kb on - strand at 551.568 kb on - strand at 551.574 kb on - strand at 551.672 kb on - strand at 551.695 kb on + strand at 551.695 kb on + strand at 551.696 kb on - strand at 551.771 kb on - strand at 551.792 kb on + strand at 551.793 kb on - strand, within CA264_02385 at 551.793 kb on - strand, within CA264_02385 at 551.829 kb on - strand, within CA264_02385 at 551.836 kb on - strand, within CA264_02385 at 551.837 kb on + strand, within CA264_02385 at 551.837 kb on + strand, within CA264_02385 at 551.841 kb on + strand, within CA264_02385 at 551.841 kb on + strand, within CA264_02385 at 551.842 kb on - strand, within CA264_02385 at 551.842 kb on - strand, within CA264_02385 at 551.842 kb on - strand, within CA264_02385 at 551.847 kb on + strand, within CA264_02385 at 551.953 kb on - strand, within CA264_02385 at 551.954 kb on + strand, within CA264_02385 at 552.085 kb on + strand, within CA264_02385 at 552.086 kb on - strand, within CA264_02385 at 552.086 kb on - strand, within CA264_02385 at 552.090 kb on + strand, within CA264_02385 at 552.090 kb on + strand, within CA264_02385 at 552.091 kb on - strand, within CA264_02385 at 552.152 kb on - strand, within CA264_02385 at 552.152 kb on - strand, within CA264_02385 at 552.294 kb on + strand, within CA264_02385 at 552.414 kb on - strand at 552.414 kb on - strand at 552.468 kb on + strand at 552.470 kb on + strand at 552.490 kb on + strand at 552.490 kb on + strand at 552.521 kb on - strand at 552.688 kb on - strand, within CA264_02390 at 552.720 kb on + strand, within CA264_02390 at 552.781 kb on + strand, within CA264_02390 at 552.932 kb on - strand, within CA264_02390 at 552.932 kb on - strand, within CA264_02390 at 552.932 kb on - strand, within CA264_02390 at 553.014 kb on + strand, within CA264_02390 at 553.022 kb on + strand, within CA264_02390 at 553.035 kb on - strand, within CA264_02390 at 553.102 kb on - strand, within CA264_02390 at 553.183 kb on + strand, within CA264_02390 at 553.184 kb on - strand, within CA264_02390 at 553.184 kb on - strand, within CA264_02390 at 553.187 kb on + strand, within CA264_02390 at 553.188 kb on - strand, within CA264_02390 at 553.287 kb on - strand, within CA264_02390 at 553.333 kb on - strand, within CA264_02390
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml remove 550,879 - CA264_02380 0.50 -0.5 550,909 - CA264_02380 0.52 -2.3 550,909 - CA264_02380 0.52 -1.8 550,910 + CA264_02380 0.52 -0.9 550,910 + CA264_02380 0.52 +1.1 550,911 - CA264_02380 0.52 -1.3 550,911 - CA264_02380 0.52 -0.9 550,911 - CA264_02380 0.52 -0.6 551,053 + CA264_02380 0.64 -0.6 551,098 + CA264_02380 0.67 +0.1 551,191 + CA264_02380 0.75 -1.0 551,197 + CA264_02380 0.75 -2.1 551,197 + CA264_02380 0.75 -0.8 551,198 - CA264_02380 0.75 +0.3 551,198 - CA264_02380 0.75 +0.2 551,218 + CA264_02380 0.77 -0.9 551,276 + CA264_02380 0.81 -0.9 551,279 - CA264_02380 0.82 -0.7 551,279 - CA264_02380 0.82 -0.0 551,346 - CA264_02380 0.87 +0.1 551,457 + -0.4 551,458 - -2.3 551,475 - -0.7 551,537 - +0.5 551,564 - -0.3 551,568 - -0.4 551,574 - -0.8 551,672 - -0.7 551,695 + -1.7 551,695 + +0.2 551,696 - -0.3 551,771 - -0.3 551,792 + -2.5 551,793 - CA264_02385 0.10 -0.9 551,793 - CA264_02385 0.10 -0.3 551,829 - CA264_02385 0.15 -1.1 551,836 - CA264_02385 0.16 -0.6 551,837 + CA264_02385 0.16 +0.7 551,837 + CA264_02385 0.16 +0.4 551,841 + CA264_02385 0.17 -0.5 551,841 + CA264_02385 0.17 +0.9 551,842 - CA264_02385 0.17 +0.1 551,842 - CA264_02385 0.17 -1.6 551,842 - CA264_02385 0.17 -1.0 551,847 + CA264_02385 0.18 -0.8 551,953 - CA264_02385 0.33 +0.8 551,954 + CA264_02385 0.33 +1.5 552,085 + CA264_02385 0.53 -0.9 552,086 - CA264_02385 0.53 +0.7 552,086 - CA264_02385 0.53 -1.1 552,090 + CA264_02385 0.53 -0.6 552,090 + CA264_02385 0.53 +0.2 552,091 - CA264_02385 0.53 -0.5 552,152 - CA264_02385 0.62 -0.7 552,152 - CA264_02385 0.62 +0.4 552,294 + CA264_02385 0.83 -0.5 552,414 - -2.3 552,414 - -0.8 552,468 + -1.5 552,470 + -0.6 552,490 + -1.4 552,490 + +0.9 552,521 - -1.6 552,688 - CA264_02390 0.18 +0.5 552,720 + CA264_02390 0.21 -3.3 552,781 + CA264_02390 0.26 -1.7 552,932 - CA264_02390 0.39 -1.2 552,932 - CA264_02390 0.39 +0.3 552,932 - CA264_02390 0.39 -3.0 553,014 + CA264_02390 0.46 -1.0 553,022 + CA264_02390 0.47 +1.8 553,035 - CA264_02390 0.48 -1.6 553,102 - CA264_02390 0.54 +2.2 553,183 + CA264_02390 0.61 -2.3 553,184 - CA264_02390 0.61 -1.2 553,184 - CA264_02390 0.61 -1.5 553,187 + CA264_02390 0.62 +0.1 553,188 - CA264_02390 0.62 -0.5 553,287 - CA264_02390 0.70 -0.8 553,333 - CA264_02390 0.74 -1.4
Or see this region's nucleotide sequence