Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02275

Experiment: m.b. Nalidixic 0.03 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02270 and CA264_02275 are separated by 296 nucleotidesCA264_02275 and CA264_02280 are separated by 19 nucleotides CA264_02270: CA264_02270 - efflux transporter periplasmic adaptor subunit, at 526,138 to 527,388 _02270 CA264_02275: CA264_02275 - sigma-54-dependent Fis family transcriptional regulator, at 527,685 to 529,067 _02275 CA264_02280: CA264_02280 - ATP-binding protein, at 529,087 to 530,442 _02280 Position (kb) 527 528 529 530Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 526.687 kb on + strand, within CA264_02270at 526.691 kb on + strand, within CA264_02270at 526.691 kb on + strand, within CA264_02270at 526.691 kb on + strand, within CA264_02270at 526.692 kb on - strand, within CA264_02270at 526.757 kb on - strand, within CA264_02270at 526.798 kb on + strand, within CA264_02270at 526.798 kb on + strand, within CA264_02270at 526.835 kb on + strand, within CA264_02270at 526.841 kb on + strand, within CA264_02270at 526.842 kb on - strand, within CA264_02270at 526.842 kb on - strand, within CA264_02270at 526.913 kb on + strand, within CA264_02270at 526.938 kb on + strand, within CA264_02270at 526.940 kb on + strand, within CA264_02270at 526.940 kb on + strand, within CA264_02270at 526.940 kb on + strand, within CA264_02270at 526.941 kb on - strand, within CA264_02270at 526.941 kb on - strand, within CA264_02270at 526.941 kb on - strand, within CA264_02270at 527.027 kb on + strand, within CA264_02270at 527.028 kb on - strand, within CA264_02270at 527.127 kb on - strand, within CA264_02270at 527.165 kb on + strand, within CA264_02270at 527.166 kb on - strand, within CA264_02270at 527.300 kb on + strandat 527.301 kb on - strandat 527.388 kb on + strandat 527.389 kb on - strandat 527.396 kb on - strandat 527.412 kb on - strandat 527.412 kb on - strandat 527.426 kb on - strandat 527.450 kb on + strandat 527.520 kb on + strandat 527.523 kb on - strandat 527.523 kb on - strandat 527.691 kb on - strandat 527.732 kb on + strandat 527.826 kb on + strand, within CA264_02275at 527.859 kb on + strand, within CA264_02275at 527.860 kb on - strand, within CA264_02275at 527.860 kb on - strand, within CA264_02275at 527.902 kb on + strand, within CA264_02275at 527.965 kb on + strand, within CA264_02275at 527.966 kb on - strand, within CA264_02275at 528.217 kb on + strand, within CA264_02275at 528.217 kb on + strand, within CA264_02275at 528.218 kb on - strand, within CA264_02275at 528.218 kb on - strand, within CA264_02275at 528.717 kb on + strand, within CA264_02275at 528.717 kb on + strand, within CA264_02275at 528.825 kb on - strand, within CA264_02275at 528.864 kb on + strand, within CA264_02275at 528.914 kb on + strand, within CA264_02275at 529.015 kb on + strandat 529.015 kb on + strandat 529.124 kb on + strandat 529.125 kb on - strandat 529.156 kb on + strandat 529.156 kb on + strandat 529.156 kb on + strandat 529.157 kb on - strandat 529.160 kb on + strandat 529.161 kb on - strandat 529.193 kb on - strandat 529.202 kb on - strandat 529.327 kb on + strand, within CA264_02280at 529.391 kb on - strand, within CA264_02280at 529.391 kb on - strand, within CA264_02280at 529.432 kb on - strand, within CA264_02280at 529.433 kb on + strand, within CA264_02280at 529.433 kb on + strand, within CA264_02280at 529.433 kb on + strand, within CA264_02280at 529.433 kb on + strand, within CA264_02280at 529.433 kb on + strand, within CA264_02280at 529.433 kb on + strand, within CA264_02280at 529.434 kb on - strand, within CA264_02280at 529.434 kb on - strand, within CA264_02280at 529.434 kb on - strand, within CA264_02280at 529.438 kb on - strand, within CA264_02280at 529.438 kb on - strand, within CA264_02280at 529.561 kb on + strand, within CA264_02280at 529.562 kb on - strand, within CA264_02280at 529.814 kb on + strand, within CA264_02280at 529.854 kb on + strand, within CA264_02280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
remove
526,687 + CA264_02270 0.44 -0.5
526,691 + CA264_02270 0.44 +0.3
526,691 + CA264_02270 0.44 -1.6
526,691 + CA264_02270 0.44 -1.9
526,692 - CA264_02270 0.44 -0.3
526,757 - CA264_02270 0.49 -0.6
526,798 + CA264_02270 0.53 -0.7
526,798 + CA264_02270 0.53 -0.5
526,835 + CA264_02270 0.56 +0.2
526,841 + CA264_02270 0.56 -3.0
526,842 - CA264_02270 0.56 -0.6
526,842 - CA264_02270 0.56 -0.0
526,913 + CA264_02270 0.62 -0.3
526,938 + CA264_02270 0.64 -1.7
526,940 + CA264_02270 0.64 +0.8
526,940 + CA264_02270 0.64 -0.4
526,940 + CA264_02270 0.64 -0.5
526,941 - CA264_02270 0.64 +1.3
526,941 - CA264_02270 0.64 -3.1
526,941 - CA264_02270 0.64 -0.2
527,027 + CA264_02270 0.71 +0.3
527,028 - CA264_02270 0.71 -2.3
527,127 - CA264_02270 0.79 -0.5
527,165 + CA264_02270 0.82 +0.8
527,166 - CA264_02270 0.82 -0.3
527,300 + +0.2
527,301 - +0.5
527,388 + -1.1
527,389 - +1.2
527,396 - -1.2
527,412 - -1.4
527,412 - -1.2
527,426 - +1.5
527,450 + -1.5
527,520 + -2.6
527,523 - +1.1
527,523 - -1.3
527,691 - +0.2
527,732 + -0.5
527,826 + CA264_02275 0.10 +0.7
527,859 + CA264_02275 0.13 -1.7
527,860 - CA264_02275 0.13 -0.9
527,860 - CA264_02275 0.13 -0.5
527,902 + CA264_02275 0.16 -1.3
527,965 + CA264_02275 0.20 -0.9
527,966 - CA264_02275 0.20 -0.9
528,217 + CA264_02275 0.38 -0.5
528,217 + CA264_02275 0.38 -0.7
528,218 - CA264_02275 0.39 +0.1
528,218 - CA264_02275 0.39 +0.5
528,717 + CA264_02275 0.75 -0.3
528,717 + CA264_02275 0.75 +0.5
528,825 - CA264_02275 0.82 +0.2
528,864 + CA264_02275 0.85 -1.0
528,914 + CA264_02275 0.89 -0.3
529,015 + -0.8
529,015 + -0.2
529,124 + -0.9
529,125 - -0.0
529,156 + -2.1
529,156 + +1.5
529,156 + -0.3
529,157 - -0.7
529,160 + +1.4
529,161 - -2.0
529,193 - +0.3
529,202 - +0.4
529,327 + CA264_02280 0.18 -0.6
529,391 - CA264_02280 0.22 +0.3
529,391 - CA264_02280 0.22 -1.1
529,432 - CA264_02280 0.25 +0.2
529,433 + CA264_02280 0.26 -1.0
529,433 + CA264_02280 0.26 -1.0
529,433 + CA264_02280 0.26 +1.8
529,433 + CA264_02280 0.26 -1.1
529,433 + CA264_02280 0.26 -1.8
529,433 + CA264_02280 0.26 -0.2
529,434 - CA264_02280 0.26 -1.3
529,434 - CA264_02280 0.26 +0.2
529,434 - CA264_02280 0.26 -2.3
529,438 - CA264_02280 0.26 -1.4
529,438 - CA264_02280 0.26 +3.2
529,561 + CA264_02280 0.35 -0.6
529,562 - CA264_02280 0.35 -0.3
529,814 + CA264_02280 0.54 -0.2
529,854 + CA264_02280 0.57 -1.4

Or see this region's nucleotide sequence