Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02070

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02060 and CA264_02065 are separated by 2 nucleotidesCA264_02065 and CA264_02070 overlap by 4 nucleotidesCA264_02070 and CA264_02075 are separated by 93 nucleotides CA264_02060: CA264_02060 - primosomal protein N', at 475,428 to 477,959 _02060 CA264_02065: CA264_02065 - hypothetical protein, at 477,962 to 478,210 _02065 CA264_02070: CA264_02070 - LLM class flavin-dependent oxidoreductase, at 478,207 to 479,238 _02070 CA264_02075: CA264_02075 - hypothetical protein, at 479,332 to 480,345 _02075 Position (kb) 478 479 480Strain fitness (log2 ratio) -3 -2 -1 0 1at 477.425 kb on + strand, within CA264_02060at 477.967 kb on + strandat 477.980 kb on + strandat 478.089 kb on - strand, within CA264_02065at 478.152 kb on + strand, within CA264_02065at 478.153 kb on - strand, within CA264_02065at 478.195 kb on - strandat 478.253 kb on + strandat 478.280 kb on + strandat 478.280 kb on + strandat 478.281 kb on - strandat 478.299 kb on + strandat 478.299 kb on + strandat 478.299 kb on + strandat 478.300 kb on - strandat 478.300 kb on - strandat 478.493 kb on + strand, within CA264_02070at 478.565 kb on + strand, within CA264_02070at 478.566 kb on - strand, within CA264_02070at 478.610 kb on - strand, within CA264_02070at 478.661 kb on + strand, within CA264_02070at 478.675 kb on + strand, within CA264_02070at 478.676 kb on - strand, within CA264_02070at 478.676 kb on - strand, within CA264_02070at 478.676 kb on - strand, within CA264_02070at 478.677 kb on + strand, within CA264_02070at 478.727 kb on - strand, within CA264_02070at 478.755 kb on + strand, within CA264_02070at 478.788 kb on - strand, within CA264_02070at 479.071 kb on - strand, within CA264_02070at 479.071 kb on - strand, within CA264_02070at 479.173 kb on + strandat 479.173 kb on + strandat 479.175 kb on + strandat 479.175 kb on + strandat 479.175 kb on + strandat 479.175 kb on + strandat 479.175 kb on + strandat 479.175 kb on + strandat 479.176 kb on - strandat 479.176 kb on - strandat 479.205 kb on + strandat 479.206 kb on - strandat 479.250 kb on + strandat 479.251 kb on - strandat 479.254 kb on + strandat 479.358 kb on - strandat 479.358 kb on - strandat 479.376 kb on + strandat 479.380 kb on - strandat 479.412 kb on - strandat 479.431 kb on + strandat 479.431 kb on + strandat 479.431 kb on + strandat 479.431 kb on + strandat 479.431 kb on + strandat 479.432 kb on - strandat 479.432 kb on - strandat 479.452 kb on + strand, within CA264_02075at 479.452 kb on + strand, within CA264_02075at 479.462 kb on + strand, within CA264_02075at 479.525 kb on + strand, within CA264_02075at 479.526 kb on - strand, within CA264_02075at 479.594 kb on - strand, within CA264_02075at 479.613 kb on - strand, within CA264_02075at 479.613 kb on - strand, within CA264_02075at 479.613 kb on - strand, within CA264_02075at 479.613 kb on - strand, within CA264_02075at 479.616 kb on + strand, within CA264_02075at 479.681 kb on + strand, within CA264_02075at 479.681 kb on + strand, within CA264_02075at 479.681 kb on + strand, within CA264_02075at 479.682 kb on - strand, within CA264_02075at 479.738 kb on - strand, within CA264_02075at 479.748 kb on + strand, within CA264_02075at 479.823 kb on + strand, within CA264_02075at 479.824 kb on - strand, within CA264_02075at 479.954 kb on - strand, within CA264_02075at 479.958 kb on + strand, within CA264_02075at 479.958 kb on + strand, within CA264_02075at 479.960 kb on + strand, within CA264_02075at 479.974 kb on - strand, within CA264_02075at 480.096 kb on - strand, within CA264_02075at 480.096 kb on - strand, within CA264_02075at 480.119 kb on + strand, within CA264_02075at 480.120 kb on - strand, within CA264_02075at 480.137 kb on + strand, within CA264_02075at 480.138 kb on - strand, within CA264_02075at 480.138 kb on - strand, within CA264_02075at 480.195 kb on - strand, within CA264_02075

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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477,425 + CA264_02060 0.79 -1.0
477,967 + +0.4
477,980 + -0.9
478,089 - CA264_02065 0.51 +0.1
478,152 + CA264_02065 0.76 -0.8
478,153 - CA264_02065 0.77 -1.5
478,195 - -1.8
478,253 + +0.0
478,280 + +1.0
478,280 + -0.4
478,281 - -0.8
478,299 + -2.2
478,299 + -1.2
478,299 + -1.9
478,300 - -1.6
478,300 - +0.3
478,493 + CA264_02070 0.28 +0.4
478,565 + CA264_02070 0.35 +0.0
478,566 - CA264_02070 0.35 -0.5
478,610 - CA264_02070 0.39 -1.7
478,661 + CA264_02070 0.44 +1.3
478,675 + CA264_02070 0.45 -1.4
478,676 - CA264_02070 0.45 +0.3
478,676 - CA264_02070 0.45 -1.6
478,676 - CA264_02070 0.45 -0.6
478,677 + CA264_02070 0.46 -0.9
478,727 - CA264_02070 0.50 -1.5
478,755 + CA264_02070 0.53 +1.0
478,788 - CA264_02070 0.56 -0.6
479,071 - CA264_02070 0.84 +0.6
479,071 - CA264_02070 0.84 -2.0
479,173 + -2.0
479,173 + -0.5
479,175 + -0.1
479,175 + -1.0
479,175 + -2.0
479,175 + +0.2
479,175 + +0.8
479,175 + -0.6
479,176 - -0.6
479,176 - +0.8
479,205 + +0.4
479,206 - -1.7
479,250 + -0.7
479,251 - +1.3
479,254 + +0.2
479,358 - -1.3
479,358 - +0.3
479,376 + -1.1
479,380 - -1.4
479,412 - -2.8
479,431 + -1.6
479,431 + -1.0
479,431 + +0.6
479,431 + -1.4
479,431 + -2.0
479,432 - -1.4
479,432 - -1.7
479,452 + CA264_02075 0.12 -0.8
479,452 + CA264_02075 0.12 +0.5
479,462 + CA264_02075 0.13 -1.7
479,525 + CA264_02075 0.19 +0.4
479,526 - CA264_02075 0.19 -2.2
479,594 - CA264_02075 0.26 +1.0
479,613 - CA264_02075 0.28 +0.2
479,613 - CA264_02075 0.28 -0.9
479,613 - CA264_02075 0.28 +0.1
479,613 - CA264_02075 0.28 -1.3
479,616 + CA264_02075 0.28 -0.7
479,681 + CA264_02075 0.34 -0.2
479,681 + CA264_02075 0.34 -1.0
479,681 + CA264_02075 0.34 -1.5
479,682 - CA264_02075 0.35 -1.0
479,738 - CA264_02075 0.40 +0.3
479,748 + CA264_02075 0.41 -1.6
479,823 + CA264_02075 0.48 +0.6
479,824 - CA264_02075 0.49 +1.3
479,954 - CA264_02075 0.61 -1.0
479,958 + CA264_02075 0.62 -0.2
479,958 + CA264_02075 0.62 -1.4
479,960 + CA264_02075 0.62 -1.2
479,974 - CA264_02075 0.63 -0.5
480,096 - CA264_02075 0.75 -1.6
480,096 - CA264_02075 0.75 -0.5
480,119 + CA264_02075 0.78 -1.0
480,120 - CA264_02075 0.78 -0.2
480,137 + CA264_02075 0.79 -0.1
480,138 - CA264_02075 0.79 -1.2
480,138 - CA264_02075 0.79 -1.4
480,195 - CA264_02075 0.85 +0.6

Or see this region's nucleotide sequence