Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01870

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01865 and CA264_01870 are separated by 104 nucleotidesCA264_01870 and CA264_01875 are separated by 382 nucleotides CA264_01865: CA264_01865 - polyisoprenoid-binding protein, at 435,689 to 436,225 _01865 CA264_01870: CA264_01870 - hypothetical protein, at 436,330 to 437,229 _01870 CA264_01875: CA264_01875 - hypothetical protein, at 437,612 to 438,175 _01875 Position (kb) 436 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 435.368 kb on + strandat 435.373 kb on + strandat 435.439 kb on - strandat 435.494 kb on - strandat 435.494 kb on - strandat 435.505 kb on + strandat 435.506 kb on - strandat 435.529 kb on - strandat 435.532 kb on - strandat 435.584 kb on + strandat 435.626 kb on + strandat 435.688 kb on + strandat 435.688 kb on + strandat 435.689 kb on - strandat 435.732 kb on + strandat 435.739 kb on + strandat 435.740 kb on - strandat 435.777 kb on - strand, within CA264_01865at 435.788 kb on + strand, within CA264_01865at 435.791 kb on - strand, within CA264_01865at 436.120 kb on + strand, within CA264_01865at 436.239 kb on + strandat 436.239 kb on + strandat 436.239 kb on + strandat 436.240 kb on - strandat 436.240 kb on - strandat 436.245 kb on + strandat 436.245 kb on + strandat 436.245 kb on + strandat 436.246 kb on - strandat 436.255 kb on + strandat 436.280 kb on - strandat 436.341 kb on - strandat 436.391 kb on + strandat 436.391 kb on + strandat 436.391 kb on + strandat 436.392 kb on - strandat 436.481 kb on + strand, within CA264_01870at 436.482 kb on - strand, within CA264_01870at 436.482 kb on - strand, within CA264_01870at 436.482 kb on - strand, within CA264_01870at 436.495 kb on - strand, within CA264_01870at 436.519 kb on - strand, within CA264_01870at 436.635 kb on - strand, within CA264_01870at 436.635 kb on - strand, within CA264_01870at 436.635 kb on - strand, within CA264_01870at 436.639 kb on + strand, within CA264_01870at 436.649 kb on + strand, within CA264_01870at 436.650 kb on - strand, within CA264_01870at 436.664 kb on - strand, within CA264_01870at 436.664 kb on - strand, within CA264_01870at 436.664 kb on - strand, within CA264_01870at 436.664 kb on - strand, within CA264_01870at 436.847 kb on - strand, within CA264_01870at 436.876 kb on + strand, within CA264_01870at 436.877 kb on - strand, within CA264_01870at 436.877 kb on - strand, within CA264_01870at 436.877 kb on - strand, within CA264_01870at 436.878 kb on + strand, within CA264_01870at 436.879 kb on - strand, within CA264_01870at 436.882 kb on - strand, within CA264_01870at 436.924 kb on + strand, within CA264_01870at 436.925 kb on - strandat 436.925 kb on - strand, within CA264_01870at 437.139 kb on - strand, within CA264_01870at 437.265 kb on + strandat 437.339 kb on + strandat 437.340 kb on - strandat 437.340 kb on - strandat 437.392 kb on - strandat 437.477 kb on + strandat 437.571 kb on - strandat 437.571 kb on - strandat 437.603 kb on - strandat 437.647 kb on + strandat 437.652 kb on + strandat 437.653 kb on - strandat 437.697 kb on + strand, within CA264_01875at 437.760 kb on + strand, within CA264_01875at 437.761 kb on - strand, within CA264_01875at 437.781 kb on + strand, within CA264_01875at 437.806 kb on - strand, within CA264_01875at 437.826 kb on + strand, within CA264_01875at 437.827 kb on - strand, within CA264_01875at 437.827 kb on - strand, within CA264_01875at 437.893 kb on + strand, within CA264_01875at 437.893 kb on + strand, within CA264_01875at 437.893 kb on + strand, within CA264_01875at 437.896 kb on - strand, within CA264_01875at 437.943 kb on + strand, within CA264_01875at 438.056 kb on + strand, within CA264_01875at 438.120 kb on - strandat 438.140 kb on + strandat 438.140 kb on + strandat 438.184 kb on - strandat 438.186 kb on - strandat 438.186 kb on - strandat 438.186 kb on - strandat 438.202 kb on - strandat 438.220 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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435,368 + -0.9
435,373 + -0.8
435,439 - -0.7
435,494 - -0.5
435,494 - +0.3
435,505 + -0.4
435,506 - -0.4
435,529 - -1.3
435,532 - -0.3
435,584 + -0.5
435,626 + -0.5
435,688 + +0.7
435,688 + +0.0
435,689 - +0.7
435,732 + +0.0
435,739 + -1.3
435,740 - -0.5
435,777 - CA264_01865 0.16 -1.1
435,788 + CA264_01865 0.18 -0.8
435,791 - CA264_01865 0.19 +0.0
436,120 + CA264_01865 0.80 +1.3
436,239 + -1.6
436,239 + +0.0
436,239 + +2.5
436,240 - -3.0
436,240 - -1.6
436,245 + +1.3
436,245 + -0.2
436,245 + -0.3
436,246 - -0.3
436,255 + +0.7
436,280 - -0.3
436,341 - +0.5
436,391 + -0.7
436,391 + +1.7
436,391 + -0.4
436,392 - -1.4
436,481 + CA264_01870 0.17 -2.2
436,482 - CA264_01870 0.17 -0.4
436,482 - CA264_01870 0.17 -0.2
436,482 - CA264_01870 0.17 -0.3
436,495 - CA264_01870 0.18 -0.1
436,519 - CA264_01870 0.21 -2.4
436,635 - CA264_01870 0.34 -0.6
436,635 - CA264_01870 0.34 -0.6
436,635 - CA264_01870 0.34 -1.4
436,639 + CA264_01870 0.34 -0.8
436,649 + CA264_01870 0.35 -1.6
436,650 - CA264_01870 0.36 +1.2
436,664 - CA264_01870 0.37 -1.3
436,664 - CA264_01870 0.37 -2.3
436,664 - CA264_01870 0.37 -1.2
436,664 - CA264_01870 0.37 -0.7
436,847 - CA264_01870 0.57 -1.2
436,876 + CA264_01870 0.61 -1.6
436,877 - CA264_01870 0.61 +0.9
436,877 - CA264_01870 0.61 +0.6
436,877 - CA264_01870 0.61 -0.1
436,878 + CA264_01870 0.61 +0.5
436,879 - CA264_01870 0.61 +2.0
436,882 - CA264_01870 0.61 +2.0
436,924 + CA264_01870 0.66 +0.0
436,925 - +1.5
436,925 - CA264_01870 0.66 -0.6
437,139 - CA264_01870 0.90 -0.6
437,265 + -0.3
437,339 + -1.0
437,340 - -1.2
437,340 - -0.2
437,392 - +1.0
437,477 + -1.2
437,571 - -1.1
437,571 - -0.6
437,603 - +0.3
437,647 + -1.3
437,652 + -0.9
437,653 - -2.3
437,697 + CA264_01875 0.15 -1.1
437,760 + CA264_01875 0.26 -0.4
437,761 - CA264_01875 0.26 +0.0
437,781 + CA264_01875 0.30 -2.1
437,806 - CA264_01875 0.34 -0.4
437,826 + CA264_01875 0.38 +0.2
437,827 - CA264_01875 0.38 +0.5
437,827 - CA264_01875 0.38 -1.4
437,893 + CA264_01875 0.50 -0.9
437,893 + CA264_01875 0.50 -2.0
437,893 + CA264_01875 0.50 -0.3
437,896 - CA264_01875 0.50 -0.4
437,943 + CA264_01875 0.59 +0.1
438,056 + CA264_01875 0.79 -1.5
438,120 - -0.3
438,140 + -1.9
438,140 + +1.5
438,184 - -1.0
438,186 - -1.4
438,186 - -2.1
438,186 - +0.5
438,202 - -2.2
438,220 + +0.5

Or see this region's nucleotide sequence