Experiment: m.b. Nalidixic 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01820 and CA264_01825 are separated by 185 nucleotides CA264_01825 and CA264_01830 are separated by 170 nucleotides CA264_01830 and CA264_01835 are separated by 126 nucleotides CA264_01835 and CA264_01840 are separated by 240 nucleotides
CA264_01820: CA264_01820 - hypothetical protein, at 427,257 to 427,988
_01820
CA264_01825: CA264_01825 - hypothetical protein, at 428,174 to 428,425
_01825
CA264_01830: CA264_01830 - Bcr/CflA family drug resistance efflux transporter, at 428,596 to 429,846
_01830
CA264_01835: CA264_01835 - GNAT family N-acetyltransferase, at 429,973 to 430,422
_01835
CA264_01840: CA264_01840 - pyridine nucleotide-disulfide oxidoreductase, at 430,663 to 431,721
_01840
Position (kb) 428
429
430 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.689 kb on + strand, within CA264_01820 at 427.689 kb on + strand, within CA264_01820 at 427.690 kb on - strand, within CA264_01820 at 427.690 kb on - strand, within CA264_01820 at 427.723 kb on + strand, within CA264_01820 at 427.814 kb on + strand, within CA264_01820 at 427.899 kb on - strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.900 kb on + strand, within CA264_01820 at 427.942 kb on - strand at 427.960 kb on + strand at 427.984 kb on - strand at 427.984 kb on - strand at 427.999 kb on + strand at 428.000 kb on - strand at 428.050 kb on - strand at 428.234 kb on + strand, within CA264_01825 at 428.474 kb on + strand at 428.506 kb on - strand at 428.506 kb on - strand at 428.531 kb on - strand at 428.531 kb on - strand at 428.594 kb on - strand at 428.594 kb on - strand at 428.594 kb on - strand at 428.596 kb on - strand at 428.612 kb on - strand at 428.620 kb on - strand at 428.629 kb on - strand at 428.674 kb on + strand at 428.716 kb on - strand at 428.812 kb on - strand, within CA264_01830 at 428.872 kb on - strand, within CA264_01830 at 428.907 kb on + strand, within CA264_01830 at 428.907 kb on + strand, within CA264_01830 at 428.908 kb on - strand, within CA264_01830 at 428.910 kb on - strand, within CA264_01830 at 428.910 kb on - strand, within CA264_01830 at 428.910 kb on - strand, within CA264_01830 at 429.006 kb on + strand, within CA264_01830 at 429.059 kb on + strand, within CA264_01830 at 429.059 kb on + strand, within CA264_01830 at 429.090 kb on + strand, within CA264_01830 at 429.090 kb on + strand, within CA264_01830 at 429.091 kb on - strand, within CA264_01830 at 429.095 kb on + strand, within CA264_01830 at 429.105 kb on + strand, within CA264_01830 at 429.106 kb on - strand, within CA264_01830 at 429.242 kb on - strand, within CA264_01830 at 429.341 kb on - strand, within CA264_01830 at 429.393 kb on + strand, within CA264_01830 at 429.393 kb on + strand, within CA264_01830 at 429.393 kb on + strand, within CA264_01830 at 429.393 kb on + strand, within CA264_01830 at 429.415 kb on + strand, within CA264_01830 at 429.416 kb on - strand, within CA264_01830 at 429.417 kb on + strand, within CA264_01830 at 429.418 kb on - strand, within CA264_01830 at 429.490 kb on + strand, within CA264_01830 at 429.491 kb on - strand, within CA264_01830 at 429.494 kb on - strand, within CA264_01830 at 429.511 kb on + strand, within CA264_01830 at 429.512 kb on - strand, within CA264_01830 at 429.696 kb on + strand, within CA264_01830 at 429.697 kb on - strand, within CA264_01830 at 429.712 kb on - strand, within CA264_01830 at 429.735 kb on + strand at 429.811 kb on - strand at 429.825 kb on - strand at 429.844 kb on + strand at 429.845 kb on - strand at 429.876 kb on - strand at 429.992 kb on - strand at 430.034 kb on - strand, within CA264_01835 at 430.211 kb on + strand, within CA264_01835 at 430.265 kb on + strand, within CA264_01835 at 430.266 kb on - strand, within CA264_01835 at 430.267 kb on + strand, within CA264_01835 at 430.267 kb on + strand, within CA264_01835 at 430.383 kb on + strand at 430.493 kb on - strand at 430.523 kb on + strand at 430.567 kb on - strand at 430.632 kb on + strand at 430.632 kb on + strand at 430.633 kb on - strand at 430.664 kb on + strand at 430.675 kb on + strand at 430.675 kb on + strand at 430.675 kb on + strand at 430.676 kb on - strand at 430.734 kb on + strand at 430.769 kb on - strand, within CA264_01840
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml remove 427,689 + CA264_01820 0.59 +0.4 427,689 + CA264_01820 0.59 -0.6 427,690 - CA264_01820 0.59 -0.5 427,690 - CA264_01820 0.59 -0.9 427,723 + CA264_01820 0.64 -0.2 427,814 + CA264_01820 0.76 +1.1 427,899 - CA264_01820 0.88 +2.0 427,900 + CA264_01820 0.88 +0.3 427,900 + CA264_01820 0.88 +0.1 427,900 + CA264_01820 0.88 +1.4 427,900 + CA264_01820 0.88 +1.9 427,942 - -1.0 427,960 + -1.5 427,984 - +0.5 427,984 - -1.1 427,999 + +0.9 428,000 - -0.6 428,050 - -1.9 428,234 + CA264_01825 0.24 +1.4 428,474 + +0.9 428,506 - +0.4 428,506 - +1.9 428,531 - +2.1 428,531 - -1.7 428,594 - -1.5 428,594 - -0.8 428,594 - -0.4 428,596 - -0.4 428,612 - +1.7 428,620 - -0.6 428,629 - -1.3 428,674 + +0.4 428,716 - +0.2 428,812 - CA264_01830 0.17 -0.7 428,872 - CA264_01830 0.22 -0.8 428,907 + CA264_01830 0.25 -0.4 428,907 + CA264_01830 0.25 +0.3 428,908 - CA264_01830 0.25 -1.8 428,910 - CA264_01830 0.25 -0.1 428,910 - CA264_01830 0.25 -0.0 428,910 - CA264_01830 0.25 -0.9 429,006 + CA264_01830 0.33 -0.6 429,059 + CA264_01830 0.37 -0.9 429,059 + CA264_01830 0.37 -1.4 429,090 + CA264_01830 0.39 +0.1 429,090 + CA264_01830 0.39 -0.2 429,091 - CA264_01830 0.40 -0.5 429,095 + CA264_01830 0.40 -0.4 429,105 + CA264_01830 0.41 -1.1 429,106 - CA264_01830 0.41 +0.5 429,242 - CA264_01830 0.52 -1.0 429,341 - CA264_01830 0.60 -0.4 429,393 + CA264_01830 0.64 -0.9 429,393 + CA264_01830 0.64 +1.4 429,393 + CA264_01830 0.64 -0.6 429,393 + CA264_01830 0.64 -0.7 429,415 + CA264_01830 0.65 -1.7 429,416 - CA264_01830 0.66 +0.1 429,417 + CA264_01830 0.66 -1.8 429,418 - CA264_01830 0.66 +0.4 429,490 + CA264_01830 0.71 +1.4 429,491 - CA264_01830 0.72 +0.6 429,494 - CA264_01830 0.72 -1.1 429,511 + CA264_01830 0.73 -0.4 429,512 - CA264_01830 0.73 -1.7 429,696 + CA264_01830 0.88 +1.7 429,697 - CA264_01830 0.88 -2.4 429,712 - CA264_01830 0.89 -1.0 429,735 + -0.1 429,811 - +0.2 429,825 - +0.9 429,844 + -1.9 429,845 - -0.9 429,876 - -0.8 429,992 - -1.5 430,034 - CA264_01835 0.14 +0.3 430,211 + CA264_01835 0.53 +0.5 430,265 + CA264_01835 0.65 +0.3 430,266 - CA264_01835 0.65 +0.6 430,267 + CA264_01835 0.65 -1.6 430,267 + CA264_01835 0.65 -1.6 430,383 + +0.6 430,493 - -0.7 430,523 + -1.1 430,567 - -1.2 430,632 + -1.3 430,632 + +1.6 430,633 - -1.4 430,664 + +0.5 430,675 + -2.5 430,675 + +0.1 430,675 + +0.5 430,676 - -2.3 430,734 + -1.4 430,769 - CA264_01840 0.10 -0.4
Or see this region's nucleotide sequence