Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01450

Experiment: m.b. Nalidixic 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01440 and CA264_01445 are separated by 70 nucleotidesCA264_01445 and CA264_01450 are separated by 173 nucleotidesCA264_01450 and CA264_01455 are separated by 97 nucleotidesCA264_01455 and CA264_01460 are separated by 10 nucleotidesCA264_01460 and CA264_01465 are separated by 219 nucleotides CA264_01440: CA264_01440 - adenylosuccinate synthase, at 342,047 to 343,330 _01440 CA264_01445: CA264_01445 - hypothetical protein, at 343,401 to 343,970 _01445 CA264_01450: CA264_01450 - 16S ribosomal RNA, at 344,144 to 345,664 _01450 CA264_01455: CA264_01455 - tRNA-Ile, at 345,762 to 345,838 _01455 CA264_01460: CA264_01460 - tRNA-Ala, at 345,849 to 345,922 _01460 CA264_01465: CA264_01465 - 23S ribosomal RNA, at 346,142 to 349,027 _01465 Position (kb) 344 345 346Strain fitness (log2 ratio) -1 0 1at 343.328 kb on + strandat 343.329 kb on - strandat 343.329 kb on - strandat 343.333 kb on - strandat 343.704 kb on - strand, within CA264_01445

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.03 mg/ml
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343,328 + -0.2
343,329 - -0.6
343,329 - +0.8
343,333 - -1.3
343,704 - CA264_01445 0.53 -1.6

Or see this region's nucleotide sequence