Strain Fitness in Agrobacterium fabrum C58 around Atu5207

Experiment: 6-aminocaproic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5206 and Atu5207 are separated by 184 nucleotidesAtu5207 and Atu5208 are separated by 163 nucleotides Atu5206: Atu5206 - LysR family transcriptional regulator, at 204,297 to 205,196 Atu5206 Atu5207: Atu5207 - hypothetical protein, at 205,381 to 206,214 Atu5207 Atu5208: Atu5208 - LysR family transcriptional regulator, at 206,378 to 207,277 Atu5208 Position (kb) 205 206 207Strain fitness (log2 ratio) -2 -1 0 1 2 3at 204.392 kb on - strand, within Atu5206at 204.425 kb on + strand, within Atu5206at 204.450 kb on + strand, within Atu5206at 204.450 kb on + strand, within Atu5206at 204.450 kb on + strand, within Atu5206at 204.458 kb on - strand, within Atu5206at 204.529 kb on + strand, within Atu5206at 204.557 kb on + strand, within Atu5206at 204.560 kb on - strand, within Atu5206at 204.596 kb on + strand, within Atu5206at 204.603 kb on + strand, within Atu5206at 204.604 kb on + strand, within Atu5206at 204.604 kb on - strand, within Atu5206at 204.641 kb on + strand, within Atu5206at 204.641 kb on + strand, within Atu5206at 204.641 kb on + strand, within Atu5206at 204.641 kb on + strand, within Atu5206at 204.649 kb on - strand, within Atu5206at 204.649 kb on - strand, within Atu5206at 204.649 kb on - strand, within Atu5206at 204.676 kb on + strand, within Atu5206at 204.680 kb on - strand, within Atu5206at 204.694 kb on - strand, within Atu5206at 204.701 kb on + strand, within Atu5206at 204.709 kb on - strand, within Atu5206at 204.847 kb on + strand, within Atu5206at 204.862 kb on + strand, within Atu5206at 204.862 kb on + strand, within Atu5206at 204.862 kb on + strand, within Atu5206at 204.862 kb on + strand, within Atu5206at 204.870 kb on - strand, within Atu5206at 204.870 kb on - strand, within Atu5206at 204.895 kb on + strand, within Atu5206at 204.903 kb on - strand, within Atu5206at 204.903 kb on - strand, within Atu5206at 204.913 kb on - strand, within Atu5206at 204.934 kb on + strand, within Atu5206at 204.935 kb on - strand, within Atu5206at 204.949 kb on + strand, within Atu5206at 204.951 kb on + strand, within Atu5206at 204.951 kb on + strand, within Atu5206at 204.965 kb on + strand, within Atu5206at 204.965 kb on + strand, within Atu5206at 204.968 kb on - strand, within Atu5206at 204.973 kb on - strand, within Atu5206at 204.973 kb on - strand, within Atu5206at 204.976 kb on + strand, within Atu5206at 204.991 kb on - strand, within Atu5206at 205.010 kb on + strand, within Atu5206at 205.038 kb on - strand, within Atu5206at 205.038 kb on - strand, within Atu5206at 205.040 kb on + strand, within Atu5206at 205.040 kb on + strand, within Atu5206at 205.040 kb on + strand, within Atu5206at 205.040 kb on + strand, within Atu5206at 205.040 kb on - strand, within Atu5206at 205.166 kb on - strandat 205.279 kb on + strandat 205.331 kb on + strandat 205.348 kb on + strandat 205.352 kb on + strandat 205.353 kb on + strandat 205.378 kb on + strandat 205.469 kb on + strand, within Atu5207at 205.477 kb on - strand, within Atu5207at 205.804 kb on + strand, within Atu5207at 205.838 kb on - strand, within Atu5207at 205.856 kb on + strand, within Atu5207at 205.856 kb on + strand, within Atu5207at 205.981 kb on + strand, within Atu5207at 205.981 kb on + strand, within Atu5207at 205.981 kb on + strand, within Atu5207at 205.989 kb on - strand, within Atu5207at 206.082 kb on + strand, within Atu5207at 206.090 kb on - strand, within Atu5207at 206.141 kb on + strandat 206.149 kb on - strandat 206.288 kb on - strandat 206.289 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-aminocaproic (N)
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204,392 - Atu5206 0.11 +1.7
204,425 + Atu5206 0.14 -0.4
204,450 + Atu5206 0.17 +0.5
204,450 + Atu5206 0.17 +0.5
204,450 + Atu5206 0.17 +0.1
204,458 - Atu5206 0.18 +1.4
204,529 + Atu5206 0.26 -0.1
204,557 + Atu5206 0.29 +1.1
204,560 - Atu5206 0.29 +0.3
204,596 + Atu5206 0.33 +1.1
204,603 + Atu5206 0.34 +0.9
204,604 + Atu5206 0.34 +0.4
204,604 - Atu5206 0.34 +0.7
204,641 + Atu5206 0.38 -0.0
204,641 + Atu5206 0.38 +0.3
204,641 + Atu5206 0.38 +1.3
204,641 + Atu5206 0.38 +2.8
204,649 - Atu5206 0.39 +1.2
204,649 - Atu5206 0.39 +0.1
204,649 - Atu5206 0.39 -0.2
204,676 + Atu5206 0.42 -0.8
204,680 - Atu5206 0.43 -1.8
204,694 - Atu5206 0.44 +0.6
204,701 + Atu5206 0.45 -0.8
204,709 - Atu5206 0.46 +0.2
204,847 + Atu5206 0.61 +0.5
204,862 + Atu5206 0.63 +0.6
204,862 + Atu5206 0.63 +0.3
204,862 + Atu5206 0.63 +0.3
204,862 + Atu5206 0.63 -0.5
204,870 - Atu5206 0.64 -0.7
204,870 - Atu5206 0.64 +0.2
204,895 + Atu5206 0.66 -0.0
204,903 - Atu5206 0.67 -0.6
204,903 - Atu5206 0.67 +1.2
204,913 - Atu5206 0.68 -0.6
204,934 + Atu5206 0.71 +0.3
204,935 - Atu5206 0.71 -0.6
204,949 + Atu5206 0.72 +0.4
204,951 + Atu5206 0.73 +0.5
204,951 + Atu5206 0.73 -0.3
204,965 + Atu5206 0.74 +2.1
204,965 + Atu5206 0.74 -0.5
204,968 - Atu5206 0.75 -0.6
204,973 - Atu5206 0.75 +0.2
204,973 - Atu5206 0.75 -0.6
204,976 + Atu5206 0.75 +0.2
204,991 - Atu5206 0.77 -0.6
205,010 + Atu5206 0.79 +1.1
205,038 - Atu5206 0.82 +1.5
205,038 - Atu5206 0.82 -0.6
205,040 + Atu5206 0.83 -0.7
205,040 + Atu5206 0.83 -0.2
205,040 + Atu5206 0.83 -0.8
205,040 + Atu5206 0.83 +1.8
205,040 - Atu5206 0.83 -0.6
205,166 - +1.2
205,279 + -0.2
205,331 + +0.3
205,348 + +2.8
205,352 + +1.0
205,353 + +1.8
205,378 + +0.3
205,469 + Atu5207 0.11 +0.2
205,477 - Atu5207 0.12 +0.1
205,804 + Atu5207 0.51 +0.6
205,838 - Atu5207 0.55 +0.5
205,856 + Atu5207 0.57 -0.1
205,856 + Atu5207 0.57 -1.8
205,981 + Atu5207 0.72 +2.7
205,981 + Atu5207 0.72 +1.2
205,981 + Atu5207 0.72 +0.6
205,989 - Atu5207 0.73 +1.0
206,082 + Atu5207 0.84 +0.8
206,090 - Atu5207 0.85 +1.4
206,141 + +0.3
206,149 - +1.2
206,288 - +2.8
206,289 - +0.8

Or see this region's nucleotide sequence