Strain Fitness in Agrobacterium fabrum C58 around Atu5188

Experiment: 6-aminocaproic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5187 and Atu5188 are separated by 194 nucleotidesAtu5188 and Atu5189 overlap by 4 nucleotidesAtu5189 and Atu5190 are separated by 114 nucleotides Atu5187: Atu5187 - LysR family transcriptional regulator, at 182,976 to 183,902 Atu5187 Atu5188: Atu5188 - zinc-binding dehydrogenase, at 184,097 to 185,083 Atu5188 Atu5189: Atu5189 - hypothetical protein, at 185,080 to 185,412 Atu5189 Atu5190: Atu5190 - hypothetical protein, at 185,527 to 186,249 Atu5190 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1 2 3at 183.113 kb on + strand, within Atu5187at 183.124 kb on - strand, within Atu5187at 183.195 kb on + strand, within Atu5187at 183.236 kb on + strand, within Atu5187at 183.236 kb on + strand, within Atu5187at 183.238 kb on + strand, within Atu5187at 183.244 kb on - strand, within Atu5187at 183.246 kb on - strand, within Atu5187at 183.345 kb on - strand, within Atu5187at 183.469 kb on + strand, within Atu5187at 183.469 kb on + strand, within Atu5187at 183.471 kb on + strand, within Atu5187at 183.472 kb on - strand, within Atu5187at 183.472 kb on - strand, within Atu5187at 183.509 kb on + strand, within Atu5187at 183.554 kb on - strand, within Atu5187at 183.567 kb on - strand, within Atu5187at 183.630 kb on + strand, within Atu5187at 183.714 kb on + strand, within Atu5187at 183.800 kb on - strand, within Atu5187at 183.824 kb on + strandat 183.839 kb on + strandat 183.839 kb on + strandat 183.860 kb on + strandat 183.866 kb on - strandat 183.881 kb on + strandat 184.128 kb on + strandat 184.128 kb on + strandat 184.136 kb on - strandat 184.137 kb on + strandat 184.203 kb on - strand, within Atu5188at 184.203 kb on - strand, within Atu5188at 184.281 kb on + strand, within Atu5188at 184.297 kb on - strand, within Atu5188at 184.361 kb on + strand, within Atu5188at 184.369 kb on - strand, within Atu5188at 184.514 kb on + strand, within Atu5188at 184.522 kb on - strand, within Atu5188at 184.522 kb on - strand, within Atu5188at 184.522 kb on - strand, within Atu5188at 184.522 kb on - strand, within Atu5188at 184.568 kb on - strand, within Atu5188at 184.599 kb on + strand, within Atu5188at 184.606 kb on + strand, within Atu5188at 184.607 kb on - strand, within Atu5188at 184.607 kb on - strand, within Atu5188at 184.736 kb on - strand, within Atu5188at 184.764 kb on + strand, within Atu5188at 184.784 kb on - strand, within Atu5188at 184.784 kb on - strand, within Atu5188at 184.897 kb on - strand, within Atu5188at 184.897 kb on - strand, within Atu5188at 185.000 kb on - strandat 185.064 kb on + strandat 185.093 kb on + strandat 185.130 kb on + strand, within Atu5189at 185.161 kb on - strand, within Atu5189at 185.163 kb on + strand, within Atu5189at 185.163 kb on + strand, within Atu5189at 185.163 kb on + strand, within Atu5189at 185.163 kb on + strand, within Atu5189at 185.163 kb on + strand, within Atu5189at 185.169 kb on - strand, within Atu5189at 185.171 kb on - strand, within Atu5189at 185.178 kb on + strand, within Atu5189at 185.221 kb on + strand, within Atu5189at 185.235 kb on + strand, within Atu5189at 185.243 kb on - strand, within Atu5189at 185.291 kb on + strand, within Atu5189at 185.314 kb on + strand, within Atu5189at 185.415 kb on - strandat 185.415 kb on - strandat 185.461 kb on + strandat 185.531 kb on + strandat 185.536 kb on + strandat 185.539 kb on - strandat 185.544 kb on - strandat 185.579 kb on - strandat 185.660 kb on + strand, within Atu5190at 185.728 kb on - strand, within Atu5190at 185.751 kb on + strand, within Atu5190at 185.765 kb on + strand, within Atu5190at 185.841 kb on + strand, within Atu5190at 185.864 kb on - strand, within Atu5190at 185.875 kb on - strand, within Atu5190at 185.888 kb on + strand, within Atu5190at 186.020 kb on - strand, within Atu5190at 186.057 kb on + strand, within Atu5190at 186.060 kb on - strand, within Atu5190at 186.060 kb on - strand, within Atu5190

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-aminocaproic (N)
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183,113 + Atu5187 0.15 +1.2
183,124 - Atu5187 0.16 +0.6
183,195 + Atu5187 0.24 +0.4
183,236 + Atu5187 0.28 +1.8
183,236 + Atu5187 0.28 +1.4
183,238 + Atu5187 0.28 -0.7
183,244 - Atu5187 0.29 -0.1
183,246 - Atu5187 0.29 +0.9
183,345 - Atu5187 0.40 +1.6
183,469 + Atu5187 0.53 +0.6
183,469 + Atu5187 0.53 +0.3
183,471 + Atu5187 0.53 +1.6
183,472 - Atu5187 0.54 +0.7
183,472 - Atu5187 0.54 +0.6
183,509 + Atu5187 0.57 +3.6
183,554 - Atu5187 0.62 +0.5
183,567 - Atu5187 0.64 +0.3
183,630 + Atu5187 0.71 +0.4
183,714 + Atu5187 0.80 +1.5
183,800 - Atu5187 0.89 -0.0
183,824 + +0.6
183,839 + -1.0
183,839 + -0.0
183,860 + +1.8
183,866 - +1.4
183,881 + +3.6
184,128 + +0.8
184,128 + +1.5
184,136 - -1.1
184,137 + +1.0
184,203 - Atu5188 0.11 +2.4
184,203 - Atu5188 0.11 +0.2
184,281 + Atu5188 0.19 -0.0
184,297 - Atu5188 0.20 -0.2
184,361 + Atu5188 0.27 +2.0
184,369 - Atu5188 0.28 +2.4
184,514 + Atu5188 0.42 +1.3
184,522 - Atu5188 0.43 +2.4
184,522 - Atu5188 0.43 -0.4
184,522 - Atu5188 0.43 -0.3
184,522 - Atu5188 0.43 +1.2
184,568 - Atu5188 0.48 -0.0
184,599 + Atu5188 0.51 -0.3
184,606 + Atu5188 0.52 +1.6
184,607 - Atu5188 0.52 +2.2
184,607 - Atu5188 0.52 -0.3
184,736 - Atu5188 0.65 -1.2
184,764 + Atu5188 0.68 +1.0
184,784 - Atu5188 0.70 +1.4
184,784 - Atu5188 0.70 -0.4
184,897 - Atu5188 0.81 -0.8
184,897 - Atu5188 0.81 +1.5
185,000 - -0.0
185,064 + -0.3
185,093 + -0.2
185,130 + Atu5189 0.15 -2.0
185,161 - Atu5189 0.24 +0.5
185,163 + Atu5189 0.25 -0.1
185,163 + Atu5189 0.25 +0.8
185,163 + Atu5189 0.25 +1.4
185,163 + Atu5189 0.25 -0.3
185,163 + Atu5189 0.25 -1.2
185,169 - Atu5189 0.27 +0.1
185,171 - Atu5189 0.27 +0.9
185,178 + Atu5189 0.29 +0.0
185,221 + Atu5189 0.42 -2.0
185,235 + Atu5189 0.47 -0.5
185,243 - Atu5189 0.49 -0.0
185,291 + Atu5189 0.63 +0.8
185,314 + Atu5189 0.70 -0.4
185,415 - +0.4
185,415 - +0.9
185,461 + +1.1
185,531 + -0.0
185,536 + -1.1
185,539 - +0.3
185,544 - +1.7
185,579 - +0.1
185,660 + Atu5190 0.18 +1.8
185,728 - Atu5190 0.28 -0.3
185,751 + Atu5190 0.31 +0.1
185,765 + Atu5190 0.33 +0.0
185,841 + Atu5190 0.43 +0.4
185,864 - Atu5190 0.47 +0.7
185,875 - Atu5190 0.48 +2.5
185,888 + Atu5190 0.50 +1.6
186,020 - Atu5190 0.68 +0.6
186,057 + Atu5190 0.73 +0.4
186,060 - Atu5190 0.74 +0.7
186,060 - Atu5190 0.74 +0.1

Or see this region's nucleotide sequence