Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26910 and ABID97_RS26915 are separated by 138 nucleotides ABID97_RS26915 and ABID97_RS26920 are separated by 19 nucleotides ABID97_RS26920 and ABID97_RS26925 are separated by 20 nucleotides
ABID97_RS26910: ABID97_RS26910 - LysR family transcriptional regulator, at 304,873 to 305,841
_RS26910
ABID97_RS26915: ABID97_RS26915 - tripartite tricarboxylate transporter substrate-binding protein, at 305,980 to 306,972
_RS26915
ABID97_RS26920: ABID97_RS26920 - DUF4863 family protein, at 306,992 to 307,534
_RS26920
ABID97_RS26925: ABID97_RS26925 - MFS transporter, at 307,555 to 308,766
_RS26925
Position (kb) 305
306
307 Strain fitness (log2 ratio) -1
0
1 at 306.301 kb on + strand, within ABID97_RS26915 at 306.302 kb on - strand, within ABID97_RS26915 at 306.460 kb on + strand, within ABID97_RS26915 at 306.602 kb on - strand, within ABID97_RS26915 at 306.602 kb on - strand, within ABID97_RS26915 at 306.602 kb on - strand, within ABID97_RS26915 at 306.632 kb on + strand, within ABID97_RS26915 at 306.760 kb on + strand, within ABID97_RS26915 at 306.760 kb on + strand, within ABID97_RS26915 at 306.761 kb on - strand, within ABID97_RS26915 at 306.895 kb on + strand at 307.118 kb on + strand, within ABID97_RS26920 at 307.259 kb on + strand, within ABID97_RS26920 at 307.260 kb on - strand, within ABID97_RS26920 at 307.706 kb on - strand, within ABID97_RS26925
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 306,301 + ABID97_RS26915 0.32 +0.3 306,302 - ABID97_RS26915 0.32 -0.1 306,460 + ABID97_RS26915 0.48 -0.8 306,602 - ABID97_RS26915 0.63 -0.1 306,602 - ABID97_RS26915 0.63 -0.5 306,602 - ABID97_RS26915 0.63 -0.3 306,632 + ABID97_RS26915 0.66 +0.9 306,760 + ABID97_RS26915 0.79 -0.8 306,760 + ABID97_RS26915 0.79 +0.2 306,761 - ABID97_RS26915 0.79 -0.3 306,895 + +0.0 307,118 + ABID97_RS26920 0.23 -1.1 307,259 + ABID97_RS26920 0.49 -0.0 307,260 - ABID97_RS26920 0.49 +0.3 307,706 - ABID97_RS26925 0.12 +0.0
Or see this region's nucleotide sequence