Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20780 and ABID97_RS20785 are separated by 24 nucleotides ABID97_RS20785 and ABID97_RS20790 are separated by 4 nucleotides ABID97_RS20790 and ABID97_RS20795 are separated by 100 nucleotides
ABID97_RS20780: ABID97_RS20780 - cytochrome c peroxidase, at 4,294,035 to 4,295,345
_RS20780
ABID97_RS20785: ABID97_RS20785 - hypothetical protein, at 4,295,370 to 4,295,984
_RS20785
ABID97_RS20790: ABID97_RS20790 - 2OG-Fe(II) oxygenase, at 4,295,989 to 4,296,669
_RS20790
ABID97_RS20795: ABID97_RS20795 - PadR family transcriptional regulator, at 4,296,770 to 4,297,384
_RS20795
Position (kb) 4295
4296 Strain fitness (log2 ratio) -1
0
1 at 4294.593 kb on + strand, within ABID97_RS20780 at 4294.593 kb on + strand, within ABID97_RS20780 at 4294.594 kb on - strand, within ABID97_RS20780 at 4294.624 kb on - strand, within ABID97_RS20780 at 4294.851 kb on + strand, within ABID97_RS20780 at 4295.026 kb on - strand, within ABID97_RS20780 at 4295.133 kb on + strand, within ABID97_RS20780 at 4295.133 kb on + strand, within ABID97_RS20780 at 4295.134 kb on - strand, within ABID97_RS20780 at 4295.158 kb on - strand, within ABID97_RS20780 at 4295.158 kb on - strand, within ABID97_RS20780 at 4295.483 kb on + strand, within ABID97_RS20785 at 4295.483 kb on + strand, within ABID97_RS20785 at 4295.484 kb on - strand, within ABID97_RS20785 at 4295.488 kb on - strand, within ABID97_RS20785 at 4295.488 kb on - strand, within ABID97_RS20785 at 4295.488 kb on - strand, within ABID97_RS20785 at 4295.712 kb on + strand, within ABID97_RS20785 at 4295.712 kb on + strand, within ABID97_RS20785 at 4295.829 kb on + strand, within ABID97_RS20785 at 4295.830 kb on - strand, within ABID97_RS20785 at 4295.830 kb on - strand, within ABID97_RS20785 at 4295.835 kb on + strand, within ABID97_RS20785 at 4295.835 kb on + strand, within ABID97_RS20785 at 4295.836 kb on - strand, within ABID97_RS20785 at 4295.836 kb on - strand, within ABID97_RS20785 at 4295.836 kb on - strand, within ABID97_RS20785 at 4295.836 kb on - strand, within ABID97_RS20785 at 4296.344 kb on - strand, within ABID97_RS20790 at 4296.538 kb on + strand, within ABID97_RS20790 at 4296.538 kb on + strand, within ABID97_RS20790 at 4296.538 kb on + strand, within ABID97_RS20790
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 4,294,593 + ABID97_RS20780 0.43 -0.2 4,294,593 + ABID97_RS20780 0.43 -0.2 4,294,594 - ABID97_RS20780 0.43 +0.6 4,294,624 - ABID97_RS20780 0.45 -0.2 4,294,851 + ABID97_RS20780 0.62 +0.2 4,295,026 - ABID97_RS20780 0.76 +0.3 4,295,133 + ABID97_RS20780 0.84 -1.1 4,295,133 + ABID97_RS20780 0.84 +0.6 4,295,134 - ABID97_RS20780 0.84 -0.1 4,295,158 - ABID97_RS20780 0.86 -0.6 4,295,158 - ABID97_RS20780 0.86 +0.1 4,295,483 + ABID97_RS20785 0.18 -0.1 4,295,483 + ABID97_RS20785 0.18 -0.3 4,295,484 - ABID97_RS20785 0.19 -0.3 4,295,488 - ABID97_RS20785 0.19 +0.3 4,295,488 - ABID97_RS20785 0.19 +0.1 4,295,488 - ABID97_RS20785 0.19 -0.2 4,295,712 + ABID97_RS20785 0.56 -0.3 4,295,712 + ABID97_RS20785 0.56 -0.9 4,295,829 + ABID97_RS20785 0.75 -0.4 4,295,830 - ABID97_RS20785 0.75 +0.1 4,295,830 - ABID97_RS20785 0.75 +0.1 4,295,835 + ABID97_RS20785 0.76 -0.1 4,295,835 + ABID97_RS20785 0.76 -1.1 4,295,836 - ABID97_RS20785 0.76 +0.3 4,295,836 - ABID97_RS20785 0.76 -0.1 4,295,836 - ABID97_RS20785 0.76 -0.0 4,295,836 - ABID97_RS20785 0.76 -0.0 4,296,344 - ABID97_RS20790 0.52 +0.3 4,296,538 + ABID97_RS20790 0.81 +0.2 4,296,538 + ABID97_RS20790 0.81 -0.2 4,296,538 + ABID97_RS20790 0.81 -0.1
Or see this region's nucleotide sequence