Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04020 and ABID97_RS04025 are separated by 118 nucleotides ABID97_RS04025 and ABID97_RS04030 are separated by 12 nucleotides
ABID97_RS04020: ABID97_RS04020 - GMC family oxidoreductase N-terminal domain-containing protein, at 824,017 to 825,648
_RS04020
ABID97_RS04025: ABID97_RS04025 - ABC transporter substrate-binding protein, at 825,767 to 826,840
_RS04025
ABID97_RS04030: ABID97_RS04030 - FAD-binding oxidoreductase, at 826,853 to 827,983
_RS04030
Position (kb) 825
826
827 Strain fitness (log2 ratio) -1
0
1 at 824.944 kb on + strand, within ABID97_RS04020 at 824.993 kb on - strand, within ABID97_RS04020 at 825.188 kb on + strand, within ABID97_RS04020 at 825.188 kb on + strand, within ABID97_RS04020 at 825.189 kb on - strand, within ABID97_RS04020 at 825.189 kb on - strand, within ABID97_RS04020 at 825.271 kb on + strand, within ABID97_RS04020 at 825.272 kb on - strand, within ABID97_RS04020 at 825.272 kb on - strand, within ABID97_RS04020 at 825.272 kb on - strand, within ABID97_RS04020 at 825.272 kb on - strand, within ABID97_RS04020 at 825.358 kb on + strand, within ABID97_RS04020 at 826.072 kb on - strand, within ABID97_RS04025 at 826.185 kb on + strand, within ABID97_RS04025 at 826.185 kb on + strand, within ABID97_RS04025 at 826.338 kb on + strand, within ABID97_RS04025 at 826.338 kb on + strand, within ABID97_RS04025 at 826.411 kb on - strand, within ABID97_RS04025 at 826.476 kb on + strand, within ABID97_RS04025 at 826.476 kb on + strand, within ABID97_RS04025 at 826.725 kb on + strand, within ABID97_RS04025 at 826.726 kb on - strand, within ABID97_RS04025 at 826.726 kb on - strand, within ABID97_RS04025 at 827.232 kb on + strand, within ABID97_RS04030 at 827.232 kb on + strand, within ABID97_RS04030 at 827.233 kb on - strand, within ABID97_RS04030
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 824,944 + ABID97_RS04020 0.57 -0.4 824,993 - ABID97_RS04020 0.60 -0.4 825,188 + ABID97_RS04020 0.72 -0.2 825,188 + ABID97_RS04020 0.72 +0.4 825,189 - ABID97_RS04020 0.72 -0.8 825,189 - ABID97_RS04020 0.72 +0.1 825,271 + ABID97_RS04020 0.77 -0.4 825,272 - ABID97_RS04020 0.77 -0.4 825,272 - ABID97_RS04020 0.77 -0.3 825,272 - ABID97_RS04020 0.77 -0.1 825,272 - ABID97_RS04020 0.77 -0.1 825,358 + ABID97_RS04020 0.82 +0.0 826,072 - ABID97_RS04025 0.28 -0.0 826,185 + ABID97_RS04025 0.39 -0.1 826,185 + ABID97_RS04025 0.39 +0.2 826,338 + ABID97_RS04025 0.53 -0.1 826,338 + ABID97_RS04025 0.53 -0.6 826,411 - ABID97_RS04025 0.60 +1.1 826,476 + ABID97_RS04025 0.66 +0.4 826,476 + ABID97_RS04025 0.66 +0.5 826,725 + ABID97_RS04025 0.89 +0.2 826,726 - ABID97_RS04025 0.89 +0.1 826,726 - ABID97_RS04025 0.89 -0.2 827,232 + ABID97_RS04030 0.34 -0.9 827,232 + ABID97_RS04030 0.34 -1.5 827,233 - ABID97_RS04030 0.34 -0.8
Or see this region's nucleotide sequence