Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23670 and PS417_23675 are separated by 114 nucleotides PS417_23675 and PS417_23680 are separated by 133 nucleotides
PS417_23670: PS417_23670 - Muconate cycloisomerase (EC 5.5.1.1) <small>(from data)</small>, at 5,117,860 to 5,118,987
_23670
PS417_23675: PS417_23675 - transcriptional regulator, at 5,119,102 to 5,119,977
_23675
PS417_23680: PS417_23680 - AraC family transcriptional regulator, at 5,120,111 to 5,121,091
_23680
Position (kb) 5119
5120 Strain fitness (log2 ratio) -2
-1
0
1 at 5118.309 kb on + strand, within PS417_23670 at 5118.310 kb on - strand, within PS417_23670 at 5118.310 kb on - strand, within PS417_23670 at 5118.696 kb on + strand, within PS417_23670 at 5118.697 kb on - strand, within PS417_23670 at 5118.789 kb on + strand, within PS417_23670 at 5118.813 kb on - strand at 5119.041 kb on + strand at 5119.056 kb on + strand at 5119.292 kb on - strand, within PS417_23675 at 5119.405 kb on + strand, within PS417_23675 at 5119.406 kb on - strand, within PS417_23675 at 5119.406 kb on - strand, within PS417_23675 at 5119.678 kb on + strand, within PS417_23675 at 5119.703 kb on - strand, within PS417_23675 at 5119.715 kb on + strand, within PS417_23675 at 5119.715 kb on + strand, within PS417_23675 at 5119.715 kb on + strand, within PS417_23675 at 5119.715 kb on + strand, within PS417_23675 at 5120.034 kb on + strand at 5120.035 kb on - strand at 5120.035 kb on - strand at 5120.048 kb on + strand at 5120.063 kb on - strand at 5120.117 kb on - strand at 5120.117 kb on - strand at 5120.298 kb on + strand, within PS417_23680 at 5120.419 kb on - strand, within PS417_23680 at 5120.419 kb on - strand, within PS417_23680 at 5120.419 kb on - strand, within PS417_23680 at 5120.419 kb on - strand, within PS417_23680 at 5120.439 kb on + strand, within PS417_23680 at 5120.440 kb on - strand, within PS417_23680 at 5120.559 kb on + strand, within PS417_23680 at 5120.560 kb on - strand, within PS417_23680 at 5120.560 kb on - strand at 5120.595 kb on + strand, within PS417_23680 at 5120.595 kb on + strand, within PS417_23680 at 5120.875 kb on - strand, within PS417_23680
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 5,118,309 + PS417_23670 0.40 +1.0 5,118,310 - PS417_23670 0.40 +0.5 5,118,310 - PS417_23670 0.40 +0.3 5,118,696 + PS417_23670 0.74 +0.2 5,118,697 - PS417_23670 0.74 +0.3 5,118,789 + PS417_23670 0.82 -0.3 5,118,813 - +1.0 5,119,041 + -0.0 5,119,056 + +0.8 5,119,292 - PS417_23675 0.22 +0.3 5,119,405 + PS417_23675 0.35 -0.3 5,119,406 - PS417_23675 0.35 -0.2 5,119,406 - PS417_23675 0.35 -1.0 5,119,678 + PS417_23675 0.66 -0.6 5,119,703 - PS417_23675 0.69 -0.0 5,119,715 + PS417_23675 0.70 +0.1 5,119,715 + PS417_23675 0.70 -0.5 5,119,715 + PS417_23675 0.70 -1.3 5,119,715 + PS417_23675 0.70 -1.2 5,120,034 + -0.2 5,120,035 - -0.5 5,120,035 - +0.1 5,120,048 + -0.2 5,120,063 - +1.0 5,120,117 - +0.9 5,120,117 - -0.7 5,120,298 + PS417_23680 0.19 +1.5 5,120,419 - PS417_23680 0.31 -0.9 5,120,419 - PS417_23680 0.31 +0.2 5,120,419 - PS417_23680 0.31 +0.6 5,120,419 - PS417_23680 0.31 +0.2 5,120,439 + PS417_23680 0.33 -0.9 5,120,440 - PS417_23680 0.34 -0.4 5,120,559 + PS417_23680 0.46 +1.0 5,120,560 - PS417_23680 0.46 +0.3 5,120,560 - +1.4 5,120,595 + PS417_23680 0.49 -0.5 5,120,595 + PS417_23680 0.49 +1.5 5,120,875 - PS417_23680 0.78 -2.0
Or see this region's nucleotide sequence