Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22130 and PS417_22135 are separated by 2 nucleotides PS417_22135 and PS417_22140 overlap by 8 nucleotides PS417_22140 and PS417_22145 are separated by 180 nucleotides
PS417_22130: PS417_22130 - glucose/xylose ABC transporter, ATPase component <small>(from data)</small>, at 4,794,477 to 4,795,637
_22130
PS417_22135: PS417_22135 - glucose/xylose ABC transporter, permease component 1 <small>(from data)</small>, at 4,795,640 to 4,796,485
_22135
PS417_22140: PS417_22140 - glucose/xylose ABC transporter, permease component 2 <small>(from data)</small>, at 4,796,478 to 4,797,386
_22140
PS417_22145: PS417_22145 - glucose/xylose ABC transporter, periplasmic substrate-binding component <small>(from data)</small>, at 4,797,567 to 4,798,853
_22145
Position (kb) 4796
4797
4798 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9 at 4795.601 kb on - strand at 4795.611 kb on + strand at 4795.612 kb on - strand at 4795.631 kb on + strand at 4795.632 kb on - strand at 4795.641 kb on + strand at 4795.681 kb on - strand at 4795.698 kb on + strand at 4795.750 kb on + strand, within PS417_22135 at 4795.752 kb on + strand, within PS417_22135 at 4795.753 kb on - strand, within PS417_22135 at 4795.753 kb on - strand, within PS417_22135 at 4795.993 kb on - strand, within PS417_22135 at 4795.995 kb on + strand, within PS417_22135 at 4795.995 kb on + strand, within PS417_22135 at 4795.995 kb on + strand, within PS417_22135 at 4796.000 kb on - strand, within PS417_22135 at 4796.015 kb on - strand, within PS417_22135 at 4796.196 kb on + strand, within PS417_22135 at 4796.197 kb on - strand, within PS417_22135 at 4796.268 kb on + strand, within PS417_22135 at 4796.268 kb on + strand, within PS417_22135 at 4796.268 kb on + strand at 4796.268 kb on + strand, within PS417_22135 at 4796.269 kb on - strand, within PS417_22135 at 4796.404 kb on - strand at 4796.433 kb on + strand at 4796.479 kb on + strand at 4796.606 kb on - strand, within PS417_22140 at 4796.756 kb on - strand, within PS417_22140 at 4796.888 kb on - strand, within PS417_22140 at 4796.888 kb on - strand, within PS417_22140 at 4797.037 kb on + strand at 4797.037 kb on + strand, within PS417_22140 at 4797.038 kb on - strand, within PS417_22140 at 4797.038 kb on - strand, within PS417_22140 at 4797.038 kb on - strand, within PS417_22140 at 4797.217 kb on + strand, within PS417_22140 at 4797.218 kb on - strand, within PS417_22140 at 4797.271 kb on + strand, within PS417_22140 at 4797.272 kb on - strand, within PS417_22140 at 4797.272 kb on - strand, within PS417_22140 at 4797.277 kb on + strand, within PS417_22140 at 4797.277 kb on + strand, within PS417_22140 at 4797.277 kb on + strand, within PS417_22140 at 4797.278 kb on - strand, within PS417_22140 at 4797.278 kb on - strand, within PS417_22140 at 4797.278 kb on - strand, within PS417_22140 at 4797.278 kb on - strand, within PS417_22140 at 4797.278 kb on - strand, within PS417_22140 at 4797.399 kb on + strand at 4797.444 kb on - strand at 4797.485 kb on - strand at 4797.485 kb on - strand at 4797.568 kb on + strand at 4797.569 kb on - strand at 4797.569 kb on - strand at 4797.640 kb on + strand at 4797.640 kb on + strand at 4797.640 kb on + strand at 4797.641 kb on - strand at 4797.684 kb on - strand at 4797.782 kb on - strand, within PS417_22145 at 4797.868 kb on - strand, within PS417_22145 at 4797.946 kb on + strand, within PS417_22145 at 4797.947 kb on - strand, within PS417_22145 at 4797.978 kb on + strand, within PS417_22145 at 4798.126 kb on + strand, within PS417_22145 at 4798.126 kb on + strand, within PS417_22145 at 4798.126 kb on + strand, within PS417_22145 at 4798.126 kb on + strand, within PS417_22145 at 4798.126 kb on + strand, within PS417_22145 at 4798.127 kb on - strand, within PS417_22145 at 4798.127 kb on - strand, within PS417_22145 at 4798.127 kb on - strand, within PS417_22145 at 4798.127 kb on - strand, within PS417_22145 at 4798.127 kb on - strand, within PS417_22145 at 4798.336 kb on + strand, within PS417_22145
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,795,601 - +8.8 4,795,611 + +8.0 4,795,612 - +7.9 4,795,631 + +7.7 4,795,632 - +8.2 4,795,641 + +8.2 4,795,681 - +7.7 4,795,698 + +8.0 4,795,750 + PS417_22135 0.13 +7.9 4,795,752 + PS417_22135 0.13 +8.0 4,795,753 - PS417_22135 0.13 +8.1 4,795,753 - PS417_22135 0.13 +7.8 4,795,993 - PS417_22135 0.42 +8.9 4,795,995 + PS417_22135 0.42 +4.6 4,795,995 + PS417_22135 0.42 +8.0 4,795,995 + PS417_22135 0.42 +7.6 4,796,000 - PS417_22135 0.43 +7.6 4,796,015 - PS417_22135 0.44 +5.2 4,796,196 + PS417_22135 0.66 +7.5 4,796,197 - PS417_22135 0.66 +7.8 4,796,268 + PS417_22135 0.74 +7.9 4,796,268 + PS417_22135 0.74 +8.1 4,796,268 + +8.0 4,796,268 + PS417_22135 0.74 +8.2 4,796,269 - PS417_22135 0.74 +7.9 4,796,404 - +7.9 4,796,433 + +7.7 4,796,479 + +7.9 4,796,606 - PS417_22140 0.14 +8.0 4,796,756 - PS417_22140 0.31 +7.5 4,796,888 - PS417_22140 0.45 +7.9 4,796,888 - PS417_22140 0.45 +8.2 4,797,037 + +5.5 4,797,037 + PS417_22140 0.61 +8.0 4,797,038 - PS417_22140 0.62 +7.5 4,797,038 - PS417_22140 0.62 +8.4 4,797,038 - PS417_22140 0.62 +7.4 4,797,217 + PS417_22140 0.81 +7.8 4,797,218 - PS417_22140 0.81 +7.8 4,797,271 + PS417_22140 0.87 +7.9 4,797,272 - PS417_22140 0.87 +7.8 4,797,272 - PS417_22140 0.87 +7.6 4,797,277 + PS417_22140 0.88 +8.1 4,797,277 + PS417_22140 0.88 +8.1 4,797,277 + PS417_22140 0.88 +7.2 4,797,278 - PS417_22140 0.88 +7.9 4,797,278 - PS417_22140 0.88 +8.1 4,797,278 - PS417_22140 0.88 +7.4 4,797,278 - PS417_22140 0.88 +7.3 4,797,278 - PS417_22140 0.88 +8.3 4,797,399 + +8.1 4,797,444 - +7.5 4,797,485 - +5.3 4,797,485 - +4.5 4,797,568 + +8.1 4,797,569 - +7.8 4,797,569 - +7.9 4,797,640 + +8.5 4,797,640 + +8.4 4,797,640 + +8.0 4,797,641 - +8.7 4,797,684 - +8.5 4,797,782 - PS417_22145 0.17 +8.6 4,797,868 - PS417_22145 0.23 +7.9 4,797,946 + PS417_22145 0.29 +8.5 4,797,947 - PS417_22145 0.30 +8.9 4,797,978 + PS417_22145 0.32 +8.0 4,798,126 + PS417_22145 0.43 +8.4 4,798,126 + PS417_22145 0.43 +7.5 4,798,126 + PS417_22145 0.43 +8.4 4,798,126 + PS417_22145 0.43 +7.4 4,798,126 + PS417_22145 0.43 +9.1 4,798,127 - PS417_22145 0.44 +8.5 4,798,127 - PS417_22145 0.44 +8.5 4,798,127 - PS417_22145 0.44 +7.8 4,798,127 - PS417_22145 0.44 +7.5 4,798,127 - PS417_22145 0.44 +8.3 4,798,336 + PS417_22145 0.60 +6.5
Or see this region's nucleotide sequence