Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22120 and PS417_22125 are separated by 102 nucleotides PS417_22125 and PS417_22130 are separated by 85 nucleotides
PS417_22120: PS417_22120 - aldose epimerase, at 4,792,097 to 4,792,942
_22120
PS417_22125: PS417_22125 - porin, at 4,793,045 to 4,794,391
_22125
PS417_22130: PS417_22130 - glucose/xylose ABC transporter, ATPase component <small>(from data)</small>, at 4,794,477 to 4,795,637
_22130
Position (kb) 4793
4794
4795 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 4792.123 kb on + strand at 4792.202 kb on - strand, within PS417_22120 at 4792.434 kb on - strand, within PS417_22120 at 4792.462 kb on - strand, within PS417_22120 at 4792.599 kb on - strand, within PS417_22120 at 4792.599 kb on - strand, within PS417_22120 at 4792.695 kb on + strand, within PS417_22120 at 4792.959 kb on + strand at 4792.960 kb on - strand at 4793.121 kb on + strand at 4793.121 kb on + strand at 4793.122 kb on - strand at 4793.169 kb on + strand at 4793.169 kb on + strand at 4793.211 kb on + strand, within PS417_22125 at 4793.349 kb on + strand, within PS417_22125 at 4793.370 kb on + strand, within PS417_22125 at 4793.370 kb on + strand, within PS417_22125 at 4793.370 kb on + strand, within PS417_22125 at 4793.370 kb on + strand, within PS417_22125 at 4793.370 kb on + strand, within PS417_22125 at 4793.371 kb on - strand, within PS417_22125 at 4793.371 kb on - strand, within PS417_22125 at 4793.371 kb on - strand, within PS417_22125 at 4793.586 kb on + strand, within PS417_22125 at 4793.586 kb on + strand, within PS417_22125 at 4793.586 kb on + strand, within PS417_22125 at 4793.587 kb on - strand, within PS417_22125 at 4793.587 kb on - strand, within PS417_22125 at 4793.727 kb on + strand, within PS417_22125 at 4793.727 kb on + strand, within PS417_22125 at 4793.745 kb on + strand, within PS417_22125 at 4793.767 kb on - strand, within PS417_22125 at 4793.767 kb on - strand, within PS417_22125 at 4793.820 kb on + strand, within PS417_22125 at 4793.820 kb on + strand, within PS417_22125 at 4793.821 kb on - strand, within PS417_22125 at 4793.824 kb on + strand, within PS417_22125 at 4793.824 kb on + strand, within PS417_22125 at 4793.824 kb on + strand, within PS417_22125 at 4793.985 kb on + strand, within PS417_22125 at 4794.174 kb on + strand, within PS417_22125 at 4794.175 kb on - strand, within PS417_22125 at 4794.192 kb on + strand, within PS417_22125 at 4794.210 kb on + strand, within PS417_22125 at 4794.211 kb on - strand, within PS417_22125 at 4794.230 kb on - strand, within PS417_22125 at 4794.251 kb on - strand, within PS417_22125 at 4794.395 kb on + strand at 4794.396 kb on - strand at 4794.396 kb on - strand at 4794.576 kb on + strand at 4794.577 kb on - strand at 4794.967 kb on + strand at 4794.968 kb on - strand, within PS417_22130 at 4795.066 kb on + strand, within PS417_22130 at 4795.066 kb on + strand, within PS417_22130 at 4795.066 kb on + strand, within PS417_22130 at 4795.066 kb on + strand, within PS417_22130 at 4795.168 kb on + strand, within PS417_22130 at 4795.169 kb on - strand, within PS417_22130
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,792,123 + +1.9 4,792,202 - PS417_22120 0.12 +0.9 4,792,434 - PS417_22120 0.40 +0.0 4,792,462 - PS417_22120 0.43 -0.0 4,792,599 - PS417_22120 0.59 -0.2 4,792,599 - PS417_22120 0.59 -0.0 4,792,695 + PS417_22120 0.71 +0.3 4,792,959 + -0.4 4,792,960 - +0.6 4,793,121 + -0.4 4,793,121 + -1.0 4,793,122 - +0.2 4,793,169 + +0.3 4,793,169 + +0.4 4,793,211 + PS417_22125 0.12 -0.5 4,793,349 + PS417_22125 0.23 +0.9 4,793,370 + PS417_22125 0.24 +1.5 4,793,370 + PS417_22125 0.24 +0.4 4,793,370 + PS417_22125 0.24 +1.3 4,793,370 + PS417_22125 0.24 +1.4 4,793,370 + PS417_22125 0.24 +0.0 4,793,371 - PS417_22125 0.24 +1.4 4,793,371 - PS417_22125 0.24 -0.0 4,793,371 - PS417_22125 0.24 +0.1 4,793,586 + PS417_22125 0.40 +0.7 4,793,586 + PS417_22125 0.40 +1.1 4,793,586 + PS417_22125 0.40 +2.5 4,793,587 - PS417_22125 0.40 +0.3 4,793,587 - PS417_22125 0.40 -0.5 4,793,727 + PS417_22125 0.51 +0.6 4,793,727 + PS417_22125 0.51 +0.4 4,793,745 + PS417_22125 0.52 -0.3 4,793,767 - PS417_22125 0.54 -1.4 4,793,767 - PS417_22125 0.54 +0.7 4,793,820 + PS417_22125 0.58 +1.0 4,793,820 + PS417_22125 0.58 +1.2 4,793,821 - PS417_22125 0.58 +1.0 4,793,824 + PS417_22125 0.58 +0.6 4,793,824 + PS417_22125 0.58 +0.3 4,793,824 + PS417_22125 0.58 +1.5 4,793,985 + PS417_22125 0.70 +0.6 4,794,174 + PS417_22125 0.84 +1.6 4,794,175 - PS417_22125 0.84 +0.3 4,794,192 + PS417_22125 0.85 +1.3 4,794,210 + PS417_22125 0.86 +0.9 4,794,211 - PS417_22125 0.87 +0.8 4,794,230 - PS417_22125 0.88 +0.5 4,794,251 - PS417_22125 0.90 +0.5 4,794,395 + +2.0 4,794,396 - +0.8 4,794,396 - +0.3 4,794,576 + +7.5 4,794,577 - +7.6 4,794,967 + +7.4 4,794,968 - PS417_22130 0.42 +7.9 4,795,066 + PS417_22130 0.51 +7.7 4,795,066 + PS417_22130 0.51 +7.9 4,795,066 + PS417_22130 0.51 +8.3 4,795,066 + PS417_22130 0.51 +7.9 4,795,168 + PS417_22130 0.60 +8.1 4,795,169 - PS417_22130 0.60 +8.0
Or see this region's nucleotide sequence