Strain Fitness in Pseudomonas simiae WCS417 around PS417_18245

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18235 and PS417_18240 are separated by 41 nucleotidesPS417_18240 and PS417_18245 overlap by 4 nucleotidesPS417_18245 and PS417_18250 are separated by 18 nucleotides PS417_18235: PS417_18235 - nitrile hydratase, at 3,973,760 to 3,974,353 _18235 PS417_18240: PS417_18240 - nitrile hydratase, at 3,974,395 to 3,975,057 _18240 PS417_18245: PS417_18245 - hypothetical protein, at 3,975,054 to 3,976,313 _18245 PS417_18250: PS417_18250 - chemotaxis protein, at 3,976,332 to 3,977,624 _18250 Position (kb) 3975 3976 3977Strain fitness (log2 ratio) -1 0 1 2at 3974.241 kb on - strand, within PS417_18235at 3974.457 kb on + strandat 3974.477 kb on + strand, within PS417_18240at 3974.477 kb on + strand, within PS417_18240at 3974.507 kb on - strand, within PS417_18240at 3974.615 kb on - strand, within PS417_18240at 3974.623 kb on + strand, within PS417_18240at 3974.623 kb on + strand, within PS417_18240at 3974.624 kb on - strand, within PS417_18240at 3974.624 kb on - strand, within PS417_18240at 3974.800 kb on + strand, within PS417_18240at 3974.801 kb on - strand, within PS417_18240at 3974.801 kb on - strand, within PS417_18240at 3974.830 kb on + strand, within PS417_18240at 3974.831 kb on - strand, within PS417_18240at 3974.831 kb on - strand, within PS417_18240at 3974.935 kb on + strand, within PS417_18240at 3974.935 kb on + strand, within PS417_18240at 3974.936 kb on - strand, within PS417_18240at 3974.954 kb on + strand, within PS417_18240at 3975.016 kb on + strandat 3975.183 kb on - strand, within PS417_18245at 3975.562 kb on + strand, within PS417_18245at 3975.591 kb on + strand, within PS417_18245at 3975.592 kb on - strand, within PS417_18245at 3975.831 kb on + strand, within PS417_18245at 3975.831 kb on + strand, within PS417_18245at 3975.831 kb on + strand, within PS417_18245at 3975.832 kb on - strand, within PS417_18245at 3976.014 kb on + strand, within PS417_18245at 3976.014 kb on + strand, within PS417_18245at 3976.014 kb on + strand, within PS417_18245at 3976.014 kb on + strand, within PS417_18245at 3976.160 kb on + strand, within PS417_18245at 3976.160 kb on + strand, within PS417_18245at 3976.160 kb on + strand, within PS417_18245at 3976.160 kb on + strand, within PS417_18245at 3976.161 kb on - strand, within PS417_18245at 3976.161 kb on - strand, within PS417_18245at 3976.320 kb on + strandat 3976.739 kb on - strand, within PS417_18250at 3976.903 kb on + strand, within PS417_18250at 3976.904 kb on - strand, within PS417_18250at 3977.259 kb on - strand, within PS417_18250at 3977.272 kb on - strand, within PS417_18250

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,974,241 - PS417_18235 0.81 -1.0
3,974,457 + +0.6
3,974,477 + PS417_18240 0.12 -0.6
3,974,477 + PS417_18240 0.12 +0.3
3,974,507 - PS417_18240 0.17 +0.8
3,974,615 - PS417_18240 0.33 +0.0
3,974,623 + PS417_18240 0.34 +0.4
3,974,623 + PS417_18240 0.34 -0.3
3,974,624 - PS417_18240 0.35 -0.2
3,974,624 - PS417_18240 0.35 -0.8
3,974,800 + PS417_18240 0.61 -0.3
3,974,801 - PS417_18240 0.61 -0.2
3,974,801 - PS417_18240 0.61 -0.1
3,974,830 + PS417_18240 0.66 -0.0
3,974,831 - PS417_18240 0.66 +0.7
3,974,831 - PS417_18240 0.66 -0.2
3,974,935 + PS417_18240 0.81 +0.0
3,974,935 + PS417_18240 0.81 +1.0
3,974,936 - PS417_18240 0.82 +0.3
3,974,954 + PS417_18240 0.84 -0.2
3,975,016 + +0.1
3,975,183 - PS417_18245 0.10 -0.4
3,975,562 + PS417_18245 0.40 +0.4
3,975,591 + PS417_18245 0.43 +0.9
3,975,592 - PS417_18245 0.43 +0.3
3,975,831 + PS417_18245 0.62 +1.3
3,975,831 + PS417_18245 0.62 +0.7
3,975,831 + PS417_18245 0.62 +0.2
3,975,832 - PS417_18245 0.62 +0.6
3,976,014 + PS417_18245 0.76 +2.6
3,976,014 + PS417_18245 0.76 +0.4
3,976,014 + PS417_18245 0.76 -0.3
3,976,014 + PS417_18245 0.76 -0.4
3,976,160 + PS417_18245 0.88 -0.1
3,976,160 + PS417_18245 0.88 +2.6
3,976,160 + PS417_18245 0.88 +0.1
3,976,160 + PS417_18245 0.88 +0.4
3,976,161 - PS417_18245 0.88 +0.1
3,976,161 - PS417_18245 0.88 +0.9
3,976,320 + +0.3
3,976,739 - PS417_18250 0.31 +0.2
3,976,903 + PS417_18250 0.44 +0.9
3,976,904 - PS417_18250 0.44 -0.8
3,977,259 - PS417_18250 0.72 +0.6
3,977,272 - PS417_18250 0.73 +1.6

Or see this region's nucleotide sequence