Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3991

Experiment: D-Salicin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Salicin (C)
4,786,057	+		Echvi_3990	0.42	-0.3
4,786,076	+		Echvi_3990	0.44	-0.9
4,786,103	+		Echvi_3990	0.47	+0.3
4,786,104	-		Echvi_3990	0.47	-0.8
4,786,104	-		Echvi_3990	0.47	-1.0
4,786,190	+		Echvi_3990	0.55	+0.8
4,786,224	-		Echvi_3990	0.58	+1.4
4,786,325	+		Echvi_3990	0.68	-0.6
4,786,437	+		Echvi_3990	0.78	-0.3
4,786,535	+		Echvi_3990	0.87	-1.6
4,786,535	+		Echvi_3990	0.87	+0.3
4,786,535	+		Echvi_3990	0.87	-0.2
4,786,536	-		Echvi_3990	0.87	+0.9
4,786,536	-		Echvi_3990	0.87	+1.6
4,786,581	+				-0.2
4,786,702	-				+0.9
4,786,702	-				-0.4
4,786,702	-				+0.5
4,786,702	-				-0.1
4,786,702	-				+0.4
4,786,705	+				-0.1
4,786,706	-				+1.2
4,786,706	-				-0.4
4,786,810	+				-1.1
4,786,824	+				+0.0
4,786,824	+				+0.7
4,786,825	-				-1.5
4,787,005	+				-1.6
4,787,005	+				+0.3
4,787,120	+				-0.6
4,787,269	-		Echvi_3991	0.20	-0.1
4,787,331	+		Echvi_3991	0.24	-1.6
4,787,332	-		Echvi_3991	0.24	+0.4
4,787,340	+		Echvi_3991	0.25	+0.0
4,787,341	-		Echvi_3991	0.25	-1.6
4,787,341	-		Echvi_3991	0.25	-0.6
4,787,341	-		Echvi_3991	0.25	-0.1
4,787,341	-		Echvi_3991	0.25	+0.3
4,787,489	+		Echvi_3991	0.35	-0.5
4,787,512	+		Echvi_3991	0.37	-1.1
4,787,513	-		Echvi_3991	0.37	+0.0
4,787,701	+		Echvi_3991	0.50	+1.1
4,787,701	+		Echvi_3991	0.50	-0.2
4,787,702	-		Echvi_3991	0.50	+0.7
4,787,770	+		Echvi_3991	0.55	+0.1
4,787,807	+		Echvi_3991	0.57	+0.3
4,787,823	-		Echvi_3991	0.58	-1.7
4,787,823	-		Echvi_3991	0.58	+0.6
4,787,896	+		Echvi_3991	0.64	+0.1
4,787,897	-		Echvi_3991	0.64	-0.0
4,787,897	-		Echvi_3991	0.64	-1.4
4,787,898	+		Echvi_3991	0.64	+0.0
4,787,898	+		Echvi_3991	0.64	+0.1
4,787,898	+		Echvi_3991	0.64	+0.5
4,787,898	+		Echvi_3991	0.64	-1.1
4,787,898	+		Echvi_3991	0.64	-0.5
4,787,899	-		Echvi_3991	0.64	+0.3
4,787,899	-		Echvi_3991	0.64	-0.2
4,787,899	-		Echvi_3991	0.64	-1.5
4,787,899	-		Echvi_3991	0.64	+1.2
4,787,899	-		Echvi_3991	0.64	-0.8
4,787,943	-		Echvi_3991	0.67	+0.2
4,787,963	-		Echvi_3991	0.68	+0.6
4,787,963	-		Echvi_3991	0.68	-3.1
4,787,963	-		Echvi_3991	0.68	+0.6
4,787,963	-		Echvi_3991	0.68	+0.3
4,787,968	+				+1.7
4,787,968	+		Echvi_3991	0.69	-2.0
4,787,968	+		Echvi_3991	0.69	+0.7
4,787,969	-		Echvi_3991	0.69	-0.6
4,787,969	-		Echvi_3991	0.69	-0.1
4,787,985	+		Echvi_3991	0.70	-2.4
4,787,985	+		Echvi_3991	0.70	-0.4
4,787,986	-		Echvi_3991	0.70	+0.6
4,787,989	+		Echvi_3991	0.70	+0.1
4,788,031	+		Echvi_3991	0.73	-1.0
4,788,031	+		Echvi_3991	0.73	-1.0
4,788,031	+		Echvi_3991	0.73	+0.1
4,788,032	-		Echvi_3991	0.73	-1.3
4,788,061	+		Echvi_3991	0.75	-0.2
4,788,061	+		Echvi_3991	0.75	+0.5
4,788,061	+		Echvi_3991	0.75	-2.3
4,788,062	-		Echvi_3991	0.75	-0.6
4,788,062	-		Echvi_3991	0.75	-0.8
4,788,065	+		Echvi_3991	0.75	+0.5
4,788,065	+		Echvi_3991	0.75	-0.4
4,788,065	+		Echvi_3991	0.75	-0.5
4,788,066	-		Echvi_3991	0.76	-0.8
4,788,066	-		Echvi_3991	0.76	-0.2
4,788,066	-		Echvi_3991	0.76	+0.2
4,788,200	-		Echvi_3991	0.85	+0.8
4,788,200	-		Echvi_3991	0.85	+0.1
4,788,246	-		Echvi_3991	0.88	+0.3
4,788,286	+				-1.0
4,788,287	-				-1.1
4,788,296	-				-0.5
4,788,296	-				+0.1
4,788,296	-				+2.3
4,788,315	-				-1.0
4,788,315	-				-0.2
4,788,315	-				+1.3
4,788,315	-				-0.1
4,788,396	+				-0.1
4,788,397	-				+1.0
4,788,397	-				-0.6
4,788,409	+				+0.0
4,788,430	-				-0.6
4,788,467	+				-0.2
4,788,543	+		Echvi_3992	0.12	-1.1
4,788,635	+		Echvi_3992	0.21	-0.4
4,788,640	+		Echvi_3992	0.22	-0.7
4,788,670	+		Echvi_3992	0.25	+0.6
4,788,670	+		Echvi_3992	0.25	-1.3
4,788,671	-		Echvi_3992	0.25	-0.5
4,788,676	-		Echvi_3992	0.26	-0.2
4,788,676	-				-0.3
4,788,679	+		Echvi_3992	0.26	+0.4
4,788,679	+		Echvi_3992	0.26	-0.6
4,788,680	-		Echvi_3992	0.26	-0.4
4,788,680	-		Echvi_3992	0.26	-0.2
4,788,680	-		Echvi_3992	0.26	-0.4
4,788,686	-		Echvi_3992	0.27	+0.4
4,788,689	+		Echvi_3992	0.27	-1.8
4,788,689	+		Echvi_3992	0.27	-2.3
4,788,690	-		Echvi_3992	0.27	-1.0
4,788,690	-		Echvi_3992	0.27	+0.2
4,788,762	-		Echvi_3992	0.34	+0.3
4,788,814	+		Echvi_3992	0.40	-2.4
4,788,839	+		Echvi_3992	0.42	+0.1
4,788,899	+		Echvi_3992	0.48	+0.3
4,788,900	-		Echvi_3992	0.49	-1.0
4,788,900	-		Echvi_3992	0.49	-1.6
4,788,921	-		Echvi_3992	0.51	-0.9
4,788,946	+		Echvi_3992	0.53	-0.1
4,788,947	-		Echvi_3992	0.53	-0.3
4,788,955	-		Echvi_3992	0.54	-1.0
4,788,955	-		Echvi_3992	0.54	+1.3
4,788,955	-		Echvi_3992	0.54	-1.2
4,788,955	-		Echvi_3992	0.54	-2.2
4,788,966	-		Echvi_3992	0.55	+0.7
4,789,061	+		Echvi_3992	0.65	+0.6
4,789,061	+		Echvi_3992	0.65	+0.0
4,789,061	+		Echvi_3992	0.65	+0.2
4,789,062	-		Echvi_3992	0.65	-0.1
4,789,110	+		Echvi_3992	0.70	+0.7
4,789,111	-		Echvi_3992	0.70	+0.4
4,789,142	+		Echvi_3992	0.73	-0.3
4,789,142	+		Echvi_3992	0.73	-1.9
4,789,143	-		Echvi_3992	0.73	-1.5
4,789,143	-		Echvi_3992	0.73	+1.0
4,789,143	-		Echvi_3992	0.73	-2.9
4,789,174	-		Echvi_3992	0.77	-1.5
4,789,258	+		Echvi_3992	0.85	-0.4
4,789,259	-		Echvi_3992	0.85	-1.8
4,789,264	+		Echvi_3992	0.86	-0.6
4,789,366	+				+1.7