Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0681

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0680 and Echvi_0681 are separated by 1 nucleotidesEchvi_0681 and Echvi_0682 overlap by 4 nucleotides Echvi_0680: Echvi_0680 - RND family efflux transporter, MFP subunit, at 764,611 to 765,693 _0680 Echvi_0681: Echvi_0681 - Cation/multidrug efflux pump, at 765,695 to 768,757 _0681 Echvi_0682: Echvi_0682 - Outer membrane protein, at 768,754 to 770,082 _0682 Position (kb) 765 766 767 768 769Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 764.931 kb on + strand, within Echvi_0680at 764.986 kb on + strand, within Echvi_0680at 764.987 kb on - strand, within Echvi_0680at 765.049 kb on + strand, within Echvi_0680at 765.049 kb on + strand, within Echvi_0680at 765.050 kb on - strand, within Echvi_0680at 765.050 kb on - strand, within Echvi_0680at 765.070 kb on + strand, within Echvi_0680at 765.071 kb on - strand, within Echvi_0680at 765.071 kb on - strand, within Echvi_0680at 765.071 kb on - strand, within Echvi_0680at 765.075 kb on + strand, within Echvi_0680at 765.076 kb on - strand, within Echvi_0680at 765.150 kb on - strand, within Echvi_0680at 765.150 kb on - strand, within Echvi_0680at 765.210 kb on + strand, within Echvi_0680at 765.210 kb on + strand, within Echvi_0680at 765.211 kb on - strand, within Echvi_0680at 765.211 kb on - strand, within Echvi_0680at 765.338 kb on - strand, within Echvi_0680at 765.459 kb on - strand, within Echvi_0680at 765.459 kb on - strand, within Echvi_0680at 765.644 kb on + strandat 765.644 kb on + strandat 765.644 kb on + strandat 765.705 kb on + strandat 765.706 kb on - strandat 765.714 kb on + strandat 765.714 kb on + strandat 765.714 kb on + strandat 765.715 kb on - strandat 765.715 kb on - strandat 765.721 kb on + strandat 765.722 kb on - strandat 765.848 kb on + strandat 765.848 kb on + strandat 765.849 kb on - strandat 765.849 kb on - strandat 765.849 kb on - strandat 765.849 kb on - strandat 765.849 kb on - strandat 765.852 kb on + strandat 765.852 kb on + strandat 765.853 kb on - strandat 765.917 kb on - strandat 765.968 kb on - strandat 765.997 kb on + strandat 765.997 kb on + strandat 766.109 kb on - strand, within Echvi_0681at 766.114 kb on - strand, within Echvi_0681at 766.171 kb on + strand, within Echvi_0681at 766.172 kb on - strand, within Echvi_0681at 766.306 kb on - strand, within Echvi_0681at 766.312 kb on + strand, within Echvi_0681at 766.375 kb on - strand, within Echvi_0681at 766.448 kb on - strand, within Echvi_0681at 766.573 kb on + strand, within Echvi_0681at 766.574 kb on - strand, within Echvi_0681at 766.574 kb on - strand, within Echvi_0681at 766.579 kb on + strand, within Echvi_0681at 766.579 kb on + strand, within Echvi_0681at 766.584 kb on + strand, within Echvi_0681at 766.584 kb on + strand, within Echvi_0681at 766.605 kb on + strand, within Echvi_0681at 766.638 kb on + strand, within Echvi_0681at 766.639 kb on - strand, within Echvi_0681at 766.639 kb on - strand, within Echvi_0681at 766.639 kb on - strand, within Echvi_0681at 766.664 kb on - strand, within Echvi_0681at 766.670 kb on + strand, within Echvi_0681at 766.670 kb on + strand, within Echvi_0681at 766.671 kb on - strand, within Echvi_0681at 766.673 kb on - strand, within Echvi_0681at 766.695 kb on + strand, within Echvi_0681at 766.695 kb on + strand, within Echvi_0681at 766.695 kb on + strand, within Echvi_0681at 766.695 kb on + strandat 766.774 kb on + strand, within Echvi_0681at 766.775 kb on - strand, within Echvi_0681at 766.807 kb on - strand, within Echvi_0681at 766.813 kb on - strand, within Echvi_0681at 766.826 kb on + strand, within Echvi_0681at 766.826 kb on + strand, within Echvi_0681at 766.826 kb on + strand, within Echvi_0681at 766.827 kb on - strand, within Echvi_0681at 766.908 kb on + strand, within Echvi_0681at 766.908 kb on + strand, within Echvi_0681at 766.908 kb on + strand, within Echvi_0681at 766.908 kb on + strand, within Echvi_0681at 766.908 kb on + strand, within Echvi_0681at 766.908 kb on + strand, within Echvi_0681at 766.909 kb on - strand, within Echvi_0681at 766.909 kb on - strand, within Echvi_0681at 766.909 kb on - strand, within Echvi_0681at 766.909 kb on - strand, within Echvi_0681at 766.909 kb on - strand, within Echvi_0681at 766.909 kb on - strand, within Echvi_0681at 766.909 kb on - strand, within Echvi_0681at 766.912 kb on - strand, within Echvi_0681at 766.925 kb on + strand, within Echvi_0681at 766.925 kb on + strand, within Echvi_0681at 767.148 kb on + strand, within Echvi_0681at 767.312 kb on + strand, within Echvi_0681at 767.312 kb on + strand, within Echvi_0681at 767.313 kb on - strand, within Echvi_0681at 767.313 kb on - strand, within Echvi_0681at 767.313 kb on - strand, within Echvi_0681at 767.313 kb on - strand, within Echvi_0681at 767.313 kb on - strand, within Echvi_0681at 767.313 kb on - strand, within Echvi_0681at 767.316 kb on + strand, within Echvi_0681at 767.401 kb on + strand, within Echvi_0681at 767.411 kb on + strand, within Echvi_0681at 767.411 kb on + strand, within Echvi_0681at 767.436 kb on + strand, within Echvi_0681at 767.436 kb on + strand, within Echvi_0681at 767.436 kb on + strand, within Echvi_0681at 767.437 kb on - strand, within Echvi_0681at 767.437 kb on - strand, within Echvi_0681at 767.437 kb on - strand, within Echvi_0681at 767.437 kb on - strand, within Echvi_0681at 767.437 kb on - strand, within Echvi_0681at 767.460 kb on + strand, within Echvi_0681at 767.486 kb on - strand, within Echvi_0681at 767.601 kb on + strand, within Echvi_0681at 767.601 kb on + strand, within Echvi_0681at 767.602 kb on - strand, within Echvi_0681at 767.613 kb on + strand, within Echvi_0681at 767.613 kb on + strand, within Echvi_0681at 767.693 kb on + strand, within Echvi_0681at 767.693 kb on + strand, within Echvi_0681at 767.757 kb on + strand, within Echvi_0681at 767.859 kb on + strand, within Echvi_0681at 767.919 kb on - strand, within Echvi_0681at 767.943 kb on - strand, within Echvi_0681at 768.034 kb on - strand, within Echvi_0681at 768.052 kb on - strand, within Echvi_0681at 768.208 kb on + strand, within Echvi_0681at 768.283 kb on + strand, within Echvi_0681at 768.283 kb on + strand, within Echvi_0681at 768.284 kb on - strand, within Echvi_0681at 768.293 kb on + strand, within Echvi_0681at 768.378 kb on + strand, within Echvi_0681at 768.403 kb on + strand, within Echvi_0681at 768.403 kb on + strand, within Echvi_0681at 768.403 kb on + strand, within Echvi_0681at 768.404 kb on - strand, within Echvi_0681at 768.672 kb on + strandat 768.672 kb on + strandat 768.672 kb on + strandat 768.673 kb on - strandat 768.673 kb on - strandat 768.675 kb on + strandat 768.675 kb on + strandat 768.676 kb on - strandat 768.693 kb on + strandat 768.715 kb on + strandat 768.716 kb on - strandat 768.719 kb on + strandat 768.754 kb on - strandat 768.798 kb on - strandat 768.798 kb on - strandat 768.799 kb on + strandat 768.800 kb on - strandat 768.866 kb on - strandat 768.955 kb on - strand, within Echvi_0682at 768.955 kb on - strand, within Echvi_0682at 768.955 kb on - strand, within Echvi_0682at 768.955 kb on - strand, within Echvi_0682at 768.959 kb on - strand, within Echvi_0682at 768.959 kb on - strand, within Echvi_0682at 768.986 kb on + strand, within Echvi_0682at 768.986 kb on + strand, within Echvi_0682at 768.987 kb on - strand, within Echvi_0682at 768.987 kb on - strand, within Echvi_0682at 769.072 kb on + strand, within Echvi_0682at 769.072 kb on + strand, within Echvi_0682at 769.072 kb on + strand, within Echvi_0682at 769.072 kb on + strand, within Echvi_0682at 769.073 kb on - strand, within Echvi_0682at 769.189 kb on + strand, within Echvi_0682at 769.190 kb on - strand, within Echvi_0682at 769.190 kb on - strand, within Echvi_0682at 769.282 kb on + strand, within Echvi_0682at 769.328 kb on + strand, within Echvi_0682at 769.328 kb on + strand, within Echvi_0682at 769.335 kb on + strand, within Echvi_0682at 769.336 kb on - strand, within Echvi_0682at 769.336 kb on - strand, within Echvi_0682at 769.451 kb on + strand, within Echvi_0682at 769.451 kb on + strand, within Echvi_0682at 769.451 kb on + strand, within Echvi_0682at 769.451 kb on + strand, within Echvi_0682at 769.451 kb on + strand, within Echvi_0682at 769.452 kb on - strand, within Echvi_0682at 769.488 kb on - strand, within Echvi_0682at 769.588 kb on + strand, within Echvi_0682at 769.589 kb on - strand, within Echvi_0682

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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764,931 + Echvi_0680 0.30 -0.2
764,986 + Echvi_0680 0.35 +2.3
764,987 - Echvi_0680 0.35 -0.9
765,049 + Echvi_0680 0.40 +1.7
765,049 + Echvi_0680 0.40 -0.6
765,050 - Echvi_0680 0.41 -0.0
765,050 - Echvi_0680 0.41 +0.9
765,070 + Echvi_0680 0.42 +1.9
765,071 - Echvi_0680 0.42 +1.3
765,071 - Echvi_0680 0.42 +0.6
765,071 - Echvi_0680 0.42 -0.3
765,075 + Echvi_0680 0.43 -0.3
765,076 - Echvi_0680 0.43 -0.1
765,150 - Echvi_0680 0.50 -1.3
765,150 - Echvi_0680 0.50 -0.7
765,210 + Echvi_0680 0.55 -0.6
765,210 + Echvi_0680 0.55 -0.5
765,211 - Echvi_0680 0.55 -0.9
765,211 - Echvi_0680 0.55 +1.4
765,338 - Echvi_0680 0.67 +0.1
765,459 - Echvi_0680 0.78 +0.0
765,459 - Echvi_0680 0.78 +0.3
765,644 + -0.9
765,644 + -0.7
765,644 + -1.9
765,705 + -0.5
765,706 - -1.3
765,714 + -0.1
765,714 + -0.5
765,714 + -2.1
765,715 - -2.0
765,715 - -0.7
765,721 + +0.3
765,722 - -0.9
765,848 + +0.5
765,848 + -0.5
765,849 - -0.1
765,849 - +0.5
765,849 - -0.8
765,849 - -0.2
765,849 - +0.3
765,852 + +1.6
765,852 + -0.3
765,853 - +0.1
765,917 - -0.2
765,968 - +0.5
765,997 + -0.2
765,997 + -0.5
766,109 - Echvi_0681 0.14 -1.1
766,114 - Echvi_0681 0.14 +0.5
766,171 + Echvi_0681 0.16 -0.3
766,172 - Echvi_0681 0.16 -0.4
766,306 - Echvi_0681 0.20 -0.1
766,312 + Echvi_0681 0.20 -0.0
766,375 - Echvi_0681 0.22 +0.0
766,448 - Echvi_0681 0.25 -0.4
766,573 + Echvi_0681 0.29 +0.2
766,574 - Echvi_0681 0.29 +0.4
766,574 - Echvi_0681 0.29 +0.1
766,579 + Echvi_0681 0.29 -0.5
766,579 + Echvi_0681 0.29 -0.9
766,584 + Echvi_0681 0.29 +2.1
766,584 + Echvi_0681 0.29 -1.1
766,605 + Echvi_0681 0.30 -1.0
766,638 + Echvi_0681 0.31 +2.8
766,639 - Echvi_0681 0.31 +0.7
766,639 - Echvi_0681 0.31 +0.1
766,639 - Echvi_0681 0.31 -0.7
766,664 - Echvi_0681 0.32 -0.7
766,670 + Echvi_0681 0.32 +0.1
766,670 + Echvi_0681 0.32 -0.0
766,671 - Echvi_0681 0.32 +1.3
766,673 - Echvi_0681 0.32 +0.2
766,695 + Echvi_0681 0.33 -0.5
766,695 + Echvi_0681 0.33 +0.0
766,695 + Echvi_0681 0.33 -0.0
766,695 + +0.9
766,774 + Echvi_0681 0.35 +0.1
766,775 - Echvi_0681 0.35 -1.0
766,807 - Echvi_0681 0.36 -1.0
766,813 - Echvi_0681 0.37 -1.1
766,826 + Echvi_0681 0.37 -0.7
766,826 + Echvi_0681 0.37 -0.7
766,826 + Echvi_0681 0.37 +0.2
766,827 - Echvi_0681 0.37 +0.1
766,908 + Echvi_0681 0.40 -0.5
766,908 + Echvi_0681 0.40 -0.9
766,908 + Echvi_0681 0.40 -0.2
766,908 + Echvi_0681 0.40 -0.9
766,908 + Echvi_0681 0.40 +0.2
766,908 + Echvi_0681 0.40 -0.4
766,909 - Echvi_0681 0.40 -1.3
766,909 - Echvi_0681 0.40 +0.1
766,909 - Echvi_0681 0.40 +0.0
766,909 - Echvi_0681 0.40 -1.2
766,909 - Echvi_0681 0.40 +1.2
766,909 - Echvi_0681 0.40 -1.0
766,909 - Echvi_0681 0.40 -1.1
766,912 - Echvi_0681 0.40 -0.9
766,925 + Echvi_0681 0.40 -0.6
766,925 + Echvi_0681 0.40 +0.5
767,148 + Echvi_0681 0.47 -3.2
767,312 + Echvi_0681 0.53 -0.5
767,312 + Echvi_0681 0.53 +0.4
767,313 - Echvi_0681 0.53 +0.1
767,313 - Echvi_0681 0.53 +0.1
767,313 - Echvi_0681 0.53 -1.2
767,313 - Echvi_0681 0.53 +0.4
767,313 - Echvi_0681 0.53 +1.9
767,313 - Echvi_0681 0.53 -0.8
767,316 + Echvi_0681 0.53 +0.2
767,401 + Echvi_0681 0.56 -0.6
767,411 + Echvi_0681 0.56 -0.9
767,411 + Echvi_0681 0.56 -0.1
767,436 + Echvi_0681 0.57 -1.6
767,436 + Echvi_0681 0.57 -0.6
767,436 + Echvi_0681 0.57 +0.1
767,437 - Echvi_0681 0.57 -2.2
767,437 - Echvi_0681 0.57 -0.9
767,437 - Echvi_0681 0.57 -1.7
767,437 - Echvi_0681 0.57 -0.5
767,437 - Echvi_0681 0.57 +0.8
767,460 + Echvi_0681 0.58 +0.5
767,486 - Echvi_0681 0.58 +1.5
767,601 + Echvi_0681 0.62 -2.5
767,601 + Echvi_0681 0.62 -0.5
767,602 - Echvi_0681 0.62 +0.8
767,613 + Echvi_0681 0.63 +1.5
767,613 + Echvi_0681 0.63 +0.3
767,693 + Echvi_0681 0.65 +0.3
767,693 + Echvi_0681 0.65 +0.1
767,757 + Echvi_0681 0.67 -0.9
767,859 + Echvi_0681 0.71 -0.2
767,919 - Echvi_0681 0.73 +3.5
767,943 - Echvi_0681 0.73 +0.6
768,034 - Echvi_0681 0.76 -0.4
768,052 - Echvi_0681 0.77 +0.1
768,208 + Echvi_0681 0.82 +0.4
768,283 + Echvi_0681 0.84 -1.6
768,283 + Echvi_0681 0.84 -0.3
768,284 - Echvi_0681 0.85 +0.3
768,293 + Echvi_0681 0.85 -0.7
768,378 + Echvi_0681 0.88 -1.7
768,403 + Echvi_0681 0.88 +0.5
768,403 + Echvi_0681 0.88 +0.4
768,403 + Echvi_0681 0.88 -0.5
768,404 - Echvi_0681 0.88 -0.1
768,672 + -1.3
768,672 + -1.1
768,672 + +0.5
768,673 - +0.2
768,673 - +0.6
768,675 + +0.6
768,675 + +0.5
768,676 - +0.0
768,693 + +1.7
768,715 + -0.2
768,716 - +0.4
768,719 + -0.9
768,754 - +0.7
768,798 - +0.2
768,798 - +0.0
768,799 + -0.4
768,800 - +1.7
768,866 - -0.6
768,955 - Echvi_0682 0.15 +1.7
768,955 - Echvi_0682 0.15 -0.7
768,955 - Echvi_0682 0.15 +1.0
768,955 - Echvi_0682 0.15 -0.2
768,959 - Echvi_0682 0.15 +0.0
768,959 - Echvi_0682 0.15 +0.1
768,986 + Echvi_0682 0.17 -1.8
768,986 + Echvi_0682 0.17 -0.2
768,987 - Echvi_0682 0.18 +0.9
768,987 - Echvi_0682 0.18 -2.9
769,072 + Echvi_0682 0.24 -2.4
769,072 + Echvi_0682 0.24 -1.1
769,072 + Echvi_0682 0.24 -0.1
769,072 + Echvi_0682 0.24 +1.6
769,073 - Echvi_0682 0.24 -0.7
769,189 + Echvi_0682 0.33 +0.6
769,190 - Echvi_0682 0.33 +1.1
769,190 - Echvi_0682 0.33 +0.1
769,282 + Echvi_0682 0.40 +0.4
769,328 + Echvi_0682 0.43 +0.5
769,328 + Echvi_0682 0.43 -2.5
769,335 + Echvi_0682 0.44 -0.3
769,336 - Echvi_0682 0.44 -0.8
769,336 - Echvi_0682 0.44 -2.9
769,451 + Echvi_0682 0.52 +0.9
769,451 + Echvi_0682 0.52 -0.1
769,451 + Echvi_0682 0.52 -0.6
769,451 + Echvi_0682 0.52 +0.5
769,451 + Echvi_0682 0.52 -0.5
769,452 - Echvi_0682 0.53 +0.9
769,488 - Echvi_0682 0.55 +0.3
769,588 + Echvi_0682 0.63 +0.7
769,589 - Echvi_0682 0.63 +0.1

Or see this region's nucleotide sequence