Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0210 and Echvi_0211 are separated by 148 nucleotides Echvi_0211 and Echvi_0212 are separated by 1 nucleotides
Echvi_0210: Echvi_0210 - Secreted and surface protein containing fasciclin-like repeats, at 229,698 to 230,642
_0210
Echvi_0211: Echvi_0211 - hypothetical protein, at 230,791 to 231,258
_0211
Echvi_0212: Echvi_0212 - Sulfite oxidase and related enzymes, at 231,260 to 232,507
_0212
Position (kb) 230
231
232 Strain fitness (log2 ratio) -2
-1
0
1
2 at 229.791 kb on - strand at 229.827 kb on - strand, within Echvi_0210 at 229.831 kb on - strand, within Echvi_0210 at 229.934 kb on + strand, within Echvi_0210 at 229.963 kb on + strand, within Echvi_0210 at 229.964 kb on - strand, within Echvi_0210 at 229.965 kb on + strand, within Echvi_0210 at 229.965 kb on + strand, within Echvi_0210 at 229.965 kb on + strand, within Echvi_0210 at 230.118 kb on + strand, within Echvi_0210 at 230.183 kb on + strand, within Echvi_0210 at 230.184 kb on - strand, within Echvi_0210 at 230.184 kb on - strand, within Echvi_0210 at 230.184 kb on - strand, within Echvi_0210 at 230.184 kb on - strand, within Echvi_0210 at 230.248 kb on + strand, within Echvi_0210 at 230.249 kb on - strand, within Echvi_0210 at 230.249 kb on - strand, within Echvi_0210 at 230.249 kb on - strand, within Echvi_0210 at 230.271 kb on - strand, within Echvi_0210 at 230.274 kb on + strand, within Echvi_0210 at 230.274 kb on + strand, within Echvi_0210 at 230.274 kb on + strand, within Echvi_0210 at 230.274 kb on + strand, within Echvi_0210 at 230.275 kb on - strand, within Echvi_0210 at 230.326 kb on + strand, within Echvi_0210 at 230.326 kb on + strand, within Echvi_0210 at 230.326 kb on + strand, within Echvi_0210 at 230.326 kb on + strand, within Echvi_0210 at 230.326 kb on + strand, within Echvi_0210 at 230.327 kb on - strand, within Echvi_0210 at 230.327 kb on - strand, within Echvi_0210 at 230.327 kb on - strand, within Echvi_0210 at 230.327 kb on - strand, within Echvi_0210 at 230.349 kb on - strand, within Echvi_0210 at 230.349 kb on - strand, within Echvi_0210 at 230.361 kb on + strand, within Echvi_0210 at 230.361 kb on + strand, within Echvi_0210 at 230.362 kb on - strand, within Echvi_0210 at 230.379 kb on - strand, within Echvi_0210 at 230.385 kb on - strand, within Echvi_0210 at 230.428 kb on - strand, within Echvi_0210 at 230.659 kb on - strand at 230.691 kb on + strand at 230.861 kb on + strand, within Echvi_0211 at 230.861 kb on + strand, within Echvi_0211 at 230.862 kb on - strand, within Echvi_0211 at 231.155 kb on + strand, within Echvi_0211 at 231.155 kb on + strand, within Echvi_0211 at 231.156 kb on - strand, within Echvi_0211 at 231.181 kb on + strand, within Echvi_0211 at 231.232 kb on + strand at 231.262 kb on - strand at 231.267 kb on - strand at 231.267 kb on - strand at 231.295 kb on + strand at 231.296 kb on - strand at 231.381 kb on + strand at 231.381 kb on + strand at 231.382 kb on - strand at 231.382 kb on - strand at 231.385 kb on - strand, within Echvi_0212 at 231.458 kb on - strand, within Echvi_0212 at 231.458 kb on - strand, within Echvi_0212 at 231.617 kb on + strand, within Echvi_0212 at 231.618 kb on - strand, within Echvi_0212 at 231.622 kb on + strand, within Echvi_0212 at 231.623 kb on - strand, within Echvi_0212 at 231.681 kb on + strand, within Echvi_0212 at 232.019 kb on + strand, within Echvi_0212 at 232.109 kb on - strand, within Echvi_0212 at 232.220 kb on + strand, within Echvi_0212 at 232.221 kb on - strand, within Echvi_0212 at 232.247 kb on - strand, within Echvi_0212
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 229,791 - +1.1 229,827 - Echvi_0210 0.14 +1.3 229,831 - Echvi_0210 0.14 -0.2 229,934 + Echvi_0210 0.25 +1.5 229,963 + Echvi_0210 0.28 -0.1 229,964 - Echvi_0210 0.28 -1.4 229,965 + Echvi_0210 0.28 -0.0 229,965 + Echvi_0210 0.28 -0.1 229,965 + Echvi_0210 0.28 +0.6 230,118 + Echvi_0210 0.44 -2.1 230,183 + Echvi_0210 0.51 -0.1 230,184 - Echvi_0210 0.51 +0.2 230,184 - Echvi_0210 0.51 +0.8 230,184 - Echvi_0210 0.51 +0.0 230,184 - Echvi_0210 0.51 -2.2 230,248 + Echvi_0210 0.58 -0.8 230,249 - Echvi_0210 0.58 -0.5 230,249 - Echvi_0210 0.58 +0.8 230,249 - Echvi_0210 0.58 +1.8 230,271 - Echvi_0210 0.61 -0.3 230,274 + Echvi_0210 0.61 +1.3 230,274 + Echvi_0210 0.61 +0.4 230,274 + Echvi_0210 0.61 +0.8 230,274 + Echvi_0210 0.61 -1.4 230,275 - Echvi_0210 0.61 +0.5 230,326 + Echvi_0210 0.66 +0.4 230,326 + Echvi_0210 0.66 -0.6 230,326 + Echvi_0210 0.66 -0.2 230,326 + Echvi_0210 0.66 +1.3 230,326 + Echvi_0210 0.66 +0.7 230,327 - Echvi_0210 0.67 +0.3 230,327 - Echvi_0210 0.67 -1.0 230,327 - Echvi_0210 0.67 +1.0 230,327 - Echvi_0210 0.67 +0.2 230,349 - Echvi_0210 0.69 +0.3 230,349 - Echvi_0210 0.69 -0.4 230,361 + Echvi_0210 0.70 -0.5 230,361 + Echvi_0210 0.70 +0.5 230,362 - Echvi_0210 0.70 -0.9 230,379 - Echvi_0210 0.72 +1.1 230,385 - Echvi_0210 0.73 +1.3 230,428 - Echvi_0210 0.77 -0.1 230,659 - +0.7 230,691 + +0.6 230,861 + Echvi_0211 0.15 +2.0 230,861 + Echvi_0211 0.15 +1.1 230,862 - Echvi_0211 0.15 +1.6 231,155 + Echvi_0211 0.78 +0.4 231,155 + Echvi_0211 0.78 +0.0 231,156 - Echvi_0211 0.78 -0.7 231,181 + Echvi_0211 0.83 -0.2 231,232 + -0.5 231,262 - +2.0 231,267 - -1.3 231,267 - +0.2 231,295 + +1.1 231,296 - -0.2 231,381 + +0.7 231,381 + +0.3 231,382 - +0.1 231,382 - -0.1 231,385 - Echvi_0212 0.10 +1.6 231,458 - Echvi_0212 0.16 +1.0 231,458 - Echvi_0212 0.16 -0.3 231,617 + Echvi_0212 0.29 +0.2 231,618 - Echvi_0212 0.29 +1.2 231,622 + Echvi_0212 0.29 -1.2 231,623 - Echvi_0212 0.29 -0.2 231,681 + Echvi_0212 0.34 -0.5 232,019 + Echvi_0212 0.61 +0.0 232,109 - Echvi_0212 0.68 +1.4 232,220 + Echvi_0212 0.77 -1.0 232,221 - Echvi_0212 0.77 -0.6 232,247 - Echvi_0212 0.79 +2.2
Or see this region's nucleotide sequence