Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20630

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20625 and CA264_20630 are separated by 115 nucleotidesCA264_20630 and CA264_20635 are separated by 70 nucleotidesCA264_20635 and CA264_20640 overlap by 4 nucleotides CA264_20625: CA264_20625 - methylcrotonoyl-CoA carboxylase, at 4,748,722 to 4,750,350 _20625 CA264_20630: CA264_20630 - hypothetical protein, at 4,750,466 to 4,751,314 _20630 CA264_20635: CA264_20635 - thioredoxin family protein, at 4,751,385 to 4,751,966 _20635 CA264_20640: CA264_20640 - 4-phosphopantetheinyl transferase, at 4,751,963 to 4,752,628 _20640 Position (kb) 4750 4751 4752Strain fitness (log2 ratio) -3 -2 -1 0 1at 4749.633 kb on + strand, within CA264_20625at 4749.652 kb on + strand, within CA264_20625at 4749.653 kb on - strand, within CA264_20625at 4749.653 kb on - strand, within CA264_20625at 4749.653 kb on - strand, within CA264_20625at 4749.654 kb on + strand, within CA264_20625at 4749.655 kb on - strand, within CA264_20625at 4749.655 kb on - strand, within CA264_20625at 4749.665 kb on - strand, within CA264_20625at 4749.816 kb on + strand, within CA264_20625at 4749.817 kb on - strand, within CA264_20625at 4749.925 kb on - strand, within CA264_20625at 4749.975 kb on - strand, within CA264_20625at 4749.975 kb on - strand, within CA264_20625at 4750.003 kb on + strand, within CA264_20625at 4750.004 kb on - strand, within CA264_20625at 4750.004 kb on - strand, within CA264_20625at 4750.042 kb on + strand, within CA264_20625at 4750.043 kb on - strand, within CA264_20625at 4750.043 kb on - strand, within CA264_20625at 4750.146 kb on - strand, within CA264_20625at 4750.192 kb on + strandat 4750.192 kb on + strandat 4750.193 kb on - strandat 4750.193 kb on - strandat 4750.193 kb on - strandat 4750.213 kb on + strandat 4750.216 kb on + strandat 4750.217 kb on - strandat 4750.289 kb on + strandat 4750.365 kb on + strandat 4750.396 kb on + strandat 4750.397 kb on - strandat 4750.406 kb on + strandat 4750.407 kb on - strandat 4750.453 kb on + strandat 4750.462 kb on + strandat 4750.462 kb on + strandat 4750.464 kb on + strandat 4750.724 kb on + strand, within CA264_20630at 4750.739 kb on + strand, within CA264_20630at 4750.794 kb on - strand, within CA264_20630at 4750.794 kb on - strand, within CA264_20630at 4750.835 kb on + strand, within CA264_20630at 4750.845 kb on + strand, within CA264_20630at 4750.846 kb on - strand, within CA264_20630at 4750.983 kb on - strand, within CA264_20630at 4751.050 kb on + strand, within CA264_20630at 4751.051 kb on - strand, within CA264_20630at 4751.051 kb on - strand, within CA264_20630at 4751.054 kb on + strand, within CA264_20630at 4751.054 kb on + strand, within CA264_20630at 4751.054 kb on + strand, within CA264_20630at 4751.055 kb on - strand, within CA264_20630at 4751.055 kb on - strand, within CA264_20630at 4751.057 kb on - strand, within CA264_20630at 4751.091 kb on - strand, within CA264_20630at 4751.105 kb on - strand, within CA264_20630at 4751.106 kb on + strand, within CA264_20630at 4751.132 kb on + strand, within CA264_20630at 4751.132 kb on + strand, within CA264_20630at 4751.132 kb on + strand, within CA264_20630at 4751.133 kb on - strand, within CA264_20630at 4751.133 kb on - strand, within CA264_20630at 4751.133 kb on - strand, within CA264_20630at 4751.200 kb on - strand, within CA264_20630at 4751.287 kb on + strandat 4751.313 kb on - strandat 4751.313 kb on - strandat 4751.313 kb on - strandat 4751.386 kb on + strandat 4751.386 kb on + strandat 4751.386 kb on + strandat 4751.386 kb on + strandat 4751.389 kb on + strandat 4751.479 kb on + strand, within CA264_20635at 4751.640 kb on - strand, within CA264_20635at 4751.642 kb on - strand, within CA264_20635at 4751.985 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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4,749,633 + CA264_20625 0.56 +0.9
4,749,652 + CA264_20625 0.57 +0.0
4,749,653 - CA264_20625 0.57 -0.4
4,749,653 - CA264_20625 0.57 +0.4
4,749,653 - CA264_20625 0.57 +1.7
4,749,654 + CA264_20625 0.57 -0.4
4,749,655 - CA264_20625 0.57 +0.0
4,749,655 - CA264_20625 0.57 -0.1
4,749,665 - CA264_20625 0.58 +0.4
4,749,816 + CA264_20625 0.67 -0.2
4,749,817 - CA264_20625 0.67 +0.3
4,749,925 - CA264_20625 0.74 +1.1
4,749,975 - CA264_20625 0.77 -0.2
4,749,975 - CA264_20625 0.77 +0.4
4,750,003 + CA264_20625 0.79 -0.9
4,750,004 - CA264_20625 0.79 +0.3
4,750,004 - CA264_20625 0.79 +0.4
4,750,042 + CA264_20625 0.81 +0.4
4,750,043 - CA264_20625 0.81 -2.9
4,750,043 - CA264_20625 0.81 +0.3
4,750,146 - CA264_20625 0.87 +0.9
4,750,192 + +0.1
4,750,192 + -0.4
4,750,193 - -0.3
4,750,193 - +0.1
4,750,193 - -0.2
4,750,213 + +0.2
4,750,216 + +0.0
4,750,217 - -0.3
4,750,289 + +0.0
4,750,365 + -0.7
4,750,396 + -0.2
4,750,397 - +0.4
4,750,406 + +0.6
4,750,407 - +0.3
4,750,453 + -0.1
4,750,462 + +0.0
4,750,462 + -0.7
4,750,464 + -0.8
4,750,724 + CA264_20630 0.30 -0.6
4,750,739 + CA264_20630 0.32 -1.1
4,750,794 - CA264_20630 0.39 -0.5
4,750,794 - CA264_20630 0.39 -2.6
4,750,835 + CA264_20630 0.43 -2.7
4,750,845 + CA264_20630 0.45 -1.2
4,750,846 - CA264_20630 0.45 -0.8
4,750,983 - CA264_20630 0.61 -0.7
4,751,050 + CA264_20630 0.69 -2.9
4,751,051 - CA264_20630 0.69 +0.8
4,751,051 - CA264_20630 0.69 +0.3
4,751,054 + CA264_20630 0.69 -0.8
4,751,054 + CA264_20630 0.69 -0.6
4,751,054 + CA264_20630 0.69 -1.9
4,751,055 - CA264_20630 0.69 -0.3
4,751,055 - CA264_20630 0.69 -1.3
4,751,057 - CA264_20630 0.70 -0.4
4,751,091 - CA264_20630 0.74 -2.1
4,751,105 - CA264_20630 0.75 -0.6
4,751,106 + CA264_20630 0.75 +0.3
4,751,132 + CA264_20630 0.78 -0.0
4,751,132 + CA264_20630 0.78 +0.6
4,751,132 + CA264_20630 0.78 -0.8
4,751,133 - CA264_20630 0.79 -1.1
4,751,133 - CA264_20630 0.79 -2.6
4,751,133 - CA264_20630 0.79 -0.7
4,751,200 - CA264_20630 0.86 -0.9
4,751,287 + -0.5
4,751,313 - -0.1
4,751,313 - -1.2
4,751,313 - -1.5
4,751,386 + -1.1
4,751,386 + -0.1
4,751,386 + -2.1
4,751,386 + -0.2
4,751,389 + -0.7
4,751,479 + CA264_20635 0.16 -2.3
4,751,640 - CA264_20635 0.44 +0.1
4,751,642 - CA264_20635 0.44 -1.3
4,751,985 - -0.9

Or see this region's nucleotide sequence