Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20285

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20275 and CA264_20280 are separated by 86 nucleotidesCA264_20280 and CA264_20285 overlap by 9 nucleotidesCA264_20285 and CA264_20290 are separated by 411 nucleotides CA264_20275: CA264_20275 - DNA-binding protein, at 4,675,467 to 4,675,802 _20275 CA264_20280: CA264_20280 - hypothetical protein, at 4,675,889 to 4,676,635 _20280 CA264_20285: CA264_20285 - hypothetical protein, at 4,676,627 to 4,676,851 _20285 CA264_20290: CA264_20290 - DNA repair protein, at 4,677,263 to 4,677,733 _20290 Position (kb) 4676 4677Strain fitness (log2 ratio) -1 0 1at 4675.633 kb on + strand, within CA264_20275at 4675.836 kb on - strandat 4675.890 kb on + strandat 4675.902 kb on + strandat 4675.903 kb on - strandat 4675.938 kb on + strandat 4675.939 kb on - strandat 4675.962 kb on - strandat 4676.058 kb on + strand, within CA264_20280at 4676.058 kb on + strand, within CA264_20280at 4676.081 kb on + strand, within CA264_20280at 4676.081 kb on + strand, within CA264_20280at 4676.177 kb on + strand, within CA264_20280at 4676.178 kb on - strand, within CA264_20280at 4676.258 kb on + strand, within CA264_20280at 4676.258 kb on + strand, within CA264_20280at 4676.265 kb on + strand, within CA264_20280at 4676.266 kb on - strand, within CA264_20280at 4676.266 kb on - strand, within CA264_20280at 4676.305 kb on + strand, within CA264_20280at 4676.306 kb on - strand, within CA264_20280at 4676.306 kb on - strand, within CA264_20280at 4676.324 kb on + strand, within CA264_20280at 4676.324 kb on + strand, within CA264_20280at 4676.324 kb on + strand, within CA264_20280at 4676.432 kb on + strand, within CA264_20280at 4676.527 kb on + strand, within CA264_20280at 4676.751 kb on + strand, within CA264_20285at 4676.751 kb on + strand, within CA264_20285at 4676.874 kb on + strandat 4676.886 kb on + strandat 4676.980 kb on + strandat 4677.066 kb on + strandat 4677.219 kb on + strandat 4677.236 kb on + strandat 4677.243 kb on + strandat 4677.244 kb on - strandat 4677.265 kb on - strandat 4677.265 kb on - strandat 4677.291 kb on + strandat 4677.485 kb on + strand, within CA264_20290at 4677.498 kb on - strand, within CA264_20290at 4677.508 kb on + strand, within CA264_20290at 4677.508 kb on + strand, within CA264_20290at 4677.512 kb on + strand, within CA264_20290at 4677.519 kb on + strand, within CA264_20290at 4677.520 kb on - strand, within CA264_20290at 4677.520 kb on - strand, within CA264_20290at 4677.520 kb on - strand, within CA264_20290at 4677.530 kb on + strand, within CA264_20290at 4677.592 kb on + strand, within CA264_20290at 4677.662 kb on + strand, within CA264_20290at 4677.662 kb on + strand, within CA264_20290at 4677.662 kb on + strand, within CA264_20290at 4677.662 kb on + strand, within CA264_20290at 4677.663 kb on - strand, within CA264_20290at 4677.675 kb on + strand, within CA264_20290at 4677.676 kb on - strand, within CA264_20290at 4677.696 kb on - strandat 4677.747 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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4,675,633 + CA264_20275 0.49 -0.8
4,675,836 - -0.5
4,675,890 + -0.3
4,675,902 + -0.3
4,675,903 - -1.1
4,675,938 + -0.0
4,675,939 - -1.5
4,675,962 - +0.4
4,676,058 + CA264_20280 0.23 +0.5
4,676,058 + CA264_20280 0.23 -0.1
4,676,081 + CA264_20280 0.26 -0.5
4,676,081 + CA264_20280 0.26 +0.9
4,676,177 + CA264_20280 0.39 -1.6
4,676,178 - CA264_20280 0.39 -0.3
4,676,258 + CA264_20280 0.49 +0.0
4,676,258 + CA264_20280 0.49 -0.9
4,676,265 + CA264_20280 0.50 -1.4
4,676,266 - CA264_20280 0.50 +0.2
4,676,266 - CA264_20280 0.50 -0.6
4,676,305 + CA264_20280 0.56 -0.4
4,676,306 - CA264_20280 0.56 +1.0
4,676,306 - CA264_20280 0.56 -0.7
4,676,324 + CA264_20280 0.58 +0.3
4,676,324 + CA264_20280 0.58 -0.3
4,676,324 + CA264_20280 0.58 -0.3
4,676,432 + CA264_20280 0.73 -0.0
4,676,527 + CA264_20280 0.85 +0.8
4,676,751 + CA264_20285 0.55 -0.9
4,676,751 + CA264_20285 0.55 -0.0
4,676,874 + +0.1
4,676,886 + -0.5
4,676,980 + -0.8
4,677,066 + -0.2
4,677,219 + +0.1
4,677,236 + +0.1
4,677,243 + +0.1
4,677,244 - -0.3
4,677,265 - -1.2
4,677,265 - -1.0
4,677,291 + +0.0
4,677,485 + CA264_20290 0.47 -0.1
4,677,498 - CA264_20290 0.50 +0.7
4,677,508 + CA264_20290 0.52 -0.0
4,677,508 + CA264_20290 0.52 -0.2
4,677,512 + CA264_20290 0.53 -0.4
4,677,519 + CA264_20290 0.54 -1.2
4,677,520 - CA264_20290 0.55 +0.5
4,677,520 - CA264_20290 0.55 -1.1
4,677,520 - CA264_20290 0.55 -0.7
4,677,530 + CA264_20290 0.57 -1.6
4,677,592 + CA264_20290 0.70 +0.2
4,677,662 + CA264_20290 0.85 +0.6
4,677,662 + CA264_20290 0.85 -0.2
4,677,662 + CA264_20290 0.85 +0.5
4,677,662 + CA264_20290 0.85 +0.4
4,677,663 - CA264_20290 0.85 -0.1
4,677,675 + CA264_20290 0.87 -0.1
4,677,676 - CA264_20290 0.88 -0.3
4,677,696 - -0.8
4,677,747 + +1.0

Or see this region's nucleotide sequence