Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19200

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19195 and CA264_19200 are separated by 287 nucleotidesCA264_19200 and CA264_19205 are separated by 1 nucleotides CA264_19195: CA264_19195 - hypothetical protein, at 4,458,170 to 4,461,142 _19195 CA264_19200: CA264_19200 - glycosyl transferase, at 4,461,430 to 4,462,200 _19200 CA264_19205: CA264_19205 - hypothetical protein, at 4,462,202 to 4,463,296 _19205 Position (kb) 4461 4462 4463Strain fitness (log2 ratio) -2 -1 0 1 2at 4460.498 kb on + strand, within CA264_19195at 4460.598 kb on + strand, within CA264_19195at 4460.662 kb on - strand, within CA264_19195at 4460.685 kb on + strand, within CA264_19195at 4460.766 kb on - strand, within CA264_19195at 4460.933 kb on - strandat 4460.934 kb on + strandat 4460.934 kb on + strandat 4460.935 kb on - strandat 4460.935 kb on - strandat 4460.935 kb on - strandat 4461.014 kb on + strandat 4461.014 kb on + strandat 4461.014 kb on + strandat 4461.015 kb on - strandat 4461.062 kb on - strandat 4461.072 kb on + strandat 4461.072 kb on + strandat 4461.073 kb on - strandat 4461.073 kb on - strandat 4461.113 kb on + strandat 4461.113 kb on + strandat 4461.213 kb on - strandat 4461.244 kb on + strandat 4461.247 kb on - strandat 4461.293 kb on + strandat 4461.293 kb on + strandat 4461.312 kb on - strandat 4461.396 kb on - strandat 4461.411 kb on + strandat 4461.415 kb on - strandat 4461.415 kb on - strandat 4461.417 kb on + strandat 4461.429 kb on + strandat 4461.438 kb on - strandat 4461.477 kb on + strandat 4461.534 kb on - strand, within CA264_19200at 4461.556 kb on - strand, within CA264_19200at 4461.617 kb on + strand, within CA264_19200at 4461.617 kb on + strand, within CA264_19200at 4461.618 kb on - strand, within CA264_19200at 4461.631 kb on + strand, within CA264_19200at 4461.631 kb on + strand, within CA264_19200at 4461.632 kb on - strand, within CA264_19200at 4461.632 kb on - strand, within CA264_19200at 4461.632 kb on - strand, within CA264_19200at 4461.632 kb on - strand, within CA264_19200at 4461.753 kb on + strand, within CA264_19200at 4461.753 kb on + strand, within CA264_19200at 4461.754 kb on - strand, within CA264_19200at 4461.874 kb on - strand, within CA264_19200at 4461.874 kb on - strand, within CA264_19200at 4461.931 kb on + strand, within CA264_19200at 4461.938 kb on - strand, within CA264_19200at 4461.940 kb on + strand, within CA264_19200at 4461.968 kb on + strand, within CA264_19200at 4461.969 kb on - strand, within CA264_19200at 4461.993 kb on + strand, within CA264_19200at 4462.037 kb on + strand, within CA264_19200at 4462.037 kb on + strand, within CA264_19200at 4462.072 kb on + strand, within CA264_19200at 4462.079 kb on + strand, within CA264_19200at 4462.114 kb on - strand, within CA264_19200at 4462.153 kb on + strandat 4462.166 kb on - strandat 4462.204 kb on - strandat 4462.205 kb on + strandat 4462.205 kb on + strandat 4462.206 kb on - strandat 4462.300 kb on + strandat 4462.301 kb on - strandat 4462.301 kb on - strandat 4462.352 kb on + strand, within CA264_19205at 4462.352 kb on + strand, within CA264_19205at 4462.353 kb on - strand, within CA264_19205at 4462.353 kb on - strand, within CA264_19205at 4462.353 kb on - strand, within CA264_19205at 4462.353 kb on - strand, within CA264_19205at 4462.540 kb on + strand, within CA264_19205at 4462.593 kb on + strand, within CA264_19205at 4462.593 kb on + strand, within CA264_19205at 4462.594 kb on - strand, within CA264_19205at 4462.661 kb on + strand, within CA264_19205at 4462.678 kb on + strand, within CA264_19205at 4462.682 kb on + strand, within CA264_19205at 4462.690 kb on + strand, within CA264_19205at 4462.690 kb on + strand, within CA264_19205at 4462.692 kb on + strand, within CA264_19205at 4462.692 kb on + strand, within CA264_19205at 4462.692 kb on + strand, within CA264_19205at 4462.693 kb on - strand, within CA264_19205at 4462.693 kb on - strand, within CA264_19205at 4462.757 kb on - strand, within CA264_19205at 4462.829 kb on + strand, within CA264_19205at 4462.863 kb on - strand, within CA264_19205at 4462.866 kb on - strand, within CA264_19205at 4462.914 kb on + strand, within CA264_19205at 4462.914 kb on + strand, within CA264_19205at 4462.915 kb on - strand, within CA264_19205at 4462.920 kb on + strand, within CA264_19205at 4462.926 kb on - strand, within CA264_19205at 4462.976 kb on + strand, within CA264_19205at 4462.977 kb on - strand, within CA264_19205at 4462.977 kb on - strand, within CA264_19205at 4463.017 kb on + strand, within CA264_19205at 4463.077 kb on - strand, within CA264_19205at 4463.103 kb on - strand, within CA264_19205at 4463.160 kb on + strand, within CA264_19205at 4463.161 kb on - strand, within CA264_19205at 4463.164 kb on + strand, within CA264_19205at 4463.165 kb on - strand, within CA264_19205at 4463.165 kb on - strand, within CA264_19205

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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4,460,498 + CA264_19195 0.78 +1.2
4,460,598 + CA264_19195 0.82 -0.8
4,460,662 - CA264_19195 0.84 +0.4
4,460,685 + CA264_19195 0.85 +0.2
4,460,766 - CA264_19195 0.87 -0.0
4,460,933 - -0.5
4,460,934 + +0.7
4,460,934 + -0.3
4,460,935 - -0.4
4,460,935 - -0.5
4,460,935 - +0.5
4,461,014 + +1.0
4,461,014 + -0.1
4,461,014 + +1.5
4,461,015 - -0.9
4,461,062 - -0.5
4,461,072 + +0.3
4,461,072 + -0.2
4,461,073 - -0.5
4,461,073 - +0.0
4,461,113 + -0.3
4,461,113 + +0.1
4,461,213 - +1.2
4,461,244 + -0.4
4,461,247 - +0.2
4,461,293 + +0.1
4,461,293 + +0.0
4,461,312 - -0.1
4,461,396 - -0.7
4,461,411 + -2.5
4,461,415 - -0.1
4,461,415 - +0.2
4,461,417 + -0.1
4,461,429 + -1.5
4,461,438 - -0.9
4,461,477 + -0.5
4,461,534 - CA264_19200 0.13 +0.3
4,461,556 - CA264_19200 0.16 -1.5
4,461,617 + CA264_19200 0.24 -1.1
4,461,617 + CA264_19200 0.24 -1.7
4,461,618 - CA264_19200 0.24 -1.8
4,461,631 + CA264_19200 0.26 -0.1
4,461,631 + CA264_19200 0.26 +0.6
4,461,632 - CA264_19200 0.26 -0.8
4,461,632 - CA264_19200 0.26 -1.3
4,461,632 - CA264_19200 0.26 -1.5
4,461,632 - CA264_19200 0.26 -1.1
4,461,753 + CA264_19200 0.42 -1.2
4,461,753 + CA264_19200 0.42 -0.7
4,461,754 - CA264_19200 0.42 -1.0
4,461,874 - CA264_19200 0.58 +0.1
4,461,874 - CA264_19200 0.58 -1.3
4,461,931 + CA264_19200 0.65 -0.9
4,461,938 - CA264_19200 0.66 -2.4
4,461,940 + CA264_19200 0.66 -0.9
4,461,968 + CA264_19200 0.70 -0.5
4,461,969 - CA264_19200 0.70 +0.0
4,461,993 + CA264_19200 0.73 -1.9
4,462,037 + CA264_19200 0.79 -0.1
4,462,037 + CA264_19200 0.79 -2.3
4,462,072 + CA264_19200 0.83 -0.4
4,462,079 + CA264_19200 0.84 +0.8
4,462,114 - CA264_19200 0.89 -0.8
4,462,153 + -0.6
4,462,166 - -0.6
4,462,204 - +0.2
4,462,205 + -0.2
4,462,205 + -0.3
4,462,206 - +0.6
4,462,300 + -0.9
4,462,301 - -0.3
4,462,301 - +0.6
4,462,352 + CA264_19205 0.14 +2.0
4,462,352 + CA264_19205 0.14 -0.4
4,462,353 - CA264_19205 0.14 -1.4
4,462,353 - CA264_19205 0.14 +0.9
4,462,353 - CA264_19205 0.14 -0.2
4,462,353 - CA264_19205 0.14 -0.6
4,462,540 + CA264_19205 0.31 -0.4
4,462,593 + CA264_19205 0.36 -0.4
4,462,593 + CA264_19205 0.36 +0.5
4,462,594 - CA264_19205 0.36 -0.8
4,462,661 + CA264_19205 0.42 -0.4
4,462,678 + CA264_19205 0.43 -1.7
4,462,682 + CA264_19205 0.44 -0.4
4,462,690 + CA264_19205 0.45 -0.6
4,462,690 + CA264_19205 0.45 -0.1
4,462,692 + CA264_19205 0.45 +2.0
4,462,692 + CA264_19205 0.45 -0.6
4,462,692 + CA264_19205 0.45 +0.9
4,462,693 - CA264_19205 0.45 +0.9
4,462,693 - CA264_19205 0.45 -1.0
4,462,757 - CA264_19205 0.51 +0.3
4,462,829 + CA264_19205 0.57 +1.3
4,462,863 - CA264_19205 0.60 -0.7
4,462,866 - CA264_19205 0.61 +0.5
4,462,914 + CA264_19205 0.65 -0.8
4,462,914 + CA264_19205 0.65 -0.3
4,462,915 - CA264_19205 0.65 +0.9
4,462,920 + CA264_19205 0.66 -0.8
4,462,926 - CA264_19205 0.66 -0.0
4,462,976 + CA264_19205 0.71 -0.1
4,462,977 - CA264_19205 0.71 -0.0
4,462,977 - CA264_19205 0.71 +0.0
4,463,017 + CA264_19205 0.74 -0.8
4,463,077 - CA264_19205 0.80 +1.0
4,463,103 - CA264_19205 0.82 -0.5
4,463,160 + CA264_19205 0.87 -0.8
4,463,161 - CA264_19205 0.88 +0.5
4,463,164 + CA264_19205 0.88 +0.9
4,463,165 - CA264_19205 0.88 -0.4
4,463,165 - CA264_19205 0.88 -0.1

Or see this region's nucleotide sequence