Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18085

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18075 and CA264_18080 are separated by 146 nucleotidesCA264_18080 and CA264_18085 are separated by 149 nucleotidesCA264_18085 and CA264_18090 are separated by 385 nucleotides CA264_18075: CA264_18075 - 3-dehydro-L-gulonate 2-dehydrogenase, at 4,204,115 to 4,205,119 _18075 CA264_18080: CA264_18080 - hypothetical protein, at 4,205,266 to 4,205,856 _18080 CA264_18085: CA264_18085 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 4,206,006 to 4,206,788 _18085 CA264_18090: CA264_18090 - DUF305 domain-containing protein, at 4,207,174 to 4,207,755 _18090 Position (kb) 4206 4207Strain fitness (log2 ratio) -1 0 1 2at 4205.139 kb on + strandat 4205.159 kb on + strandat 4205.165 kb on + strandat 4205.166 kb on - strandat 4205.166 kb on - strandat 4205.184 kb on - strandat 4205.202 kb on - strandat 4205.214 kb on - strandat 4205.216 kb on - strandat 4205.294 kb on - strandat 4205.307 kb on + strandat 4205.307 kb on + strandat 4205.314 kb on + strandat 4205.317 kb on + strandat 4205.318 kb on - strandat 4205.318 kb on - strandat 4205.318 kb on - strandat 4205.397 kb on + strand, within CA264_18080at 4205.397 kb on + strand, within CA264_18080at 4205.397 kb on + strand, within CA264_18080at 4205.398 kb on - strand, within CA264_18080at 4205.421 kb on - strand, within CA264_18080at 4205.421 kb on - strand, within CA264_18080at 4205.627 kb on + strand, within CA264_18080at 4205.627 kb on + strand, within CA264_18080at 4205.628 kb on - strand, within CA264_18080at 4205.628 kb on - strand, within CA264_18080at 4205.794 kb on + strand, within CA264_18080at 4205.851 kb on + strandat 4205.855 kb on - strandat 4205.875 kb on - strandat 4205.982 kb on + strandat 4206.002 kb on - strandat 4206.002 kb on - strandat 4206.012 kb on + strandat 4206.025 kb on + strandat 4206.105 kb on + strand, within CA264_18085at 4206.134 kb on - strand, within CA264_18085at 4206.134 kb on - strand, within CA264_18085at 4206.276 kb on - strand, within CA264_18085at 4206.316 kb on + strand, within CA264_18085at 4206.393 kb on - strand, within CA264_18085at 4206.410 kb on - strand, within CA264_18085at 4206.416 kb on - strand, within CA264_18085at 4206.509 kb on - strand, within CA264_18085at 4206.509 kb on - strand, within CA264_18085at 4206.687 kb on + strand, within CA264_18085at 4206.815 kb on + strandat 4206.861 kb on + strandat 4206.861 kb on + strandat 4206.883 kb on + strandat 4206.899 kb on - strandat 4206.899 kb on - strandat 4206.902 kb on + strandat 4206.903 kb on - strandat 4206.942 kb on + strandat 4206.943 kb on - strandat 4206.943 kb on - strandat 4206.980 kb on + strandat 4207.002 kb on - strandat 4207.127 kb on - strandat 4207.127 kb on - strandat 4207.162 kb on + strandat 4207.166 kb on - strandat 4207.167 kb on + strandat 4207.168 kb on - strandat 4207.302 kb on + strand, within CA264_18090at 4207.303 kb on - strand, within CA264_18090at 4207.303 kb on - strand, within CA264_18090at 4207.320 kb on + strand, within CA264_18090at 4207.321 kb on - strand, within CA264_18090at 4207.415 kb on + strand, within CA264_18090at 4207.415 kb on + strand, within CA264_18090at 4207.582 kb on + strand, within CA264_18090at 4207.583 kb on - strand, within CA264_18090at 4207.649 kb on + strand, within CA264_18090at 4207.650 kb on - strand, within CA264_18090at 4207.650 kb on - strand, within CA264_18090at 4207.753 kb on + strandat 4207.754 kb on - strandat 4207.754 kb on - strandat 4207.775 kb on + strandat 4207.776 kb on - strandat 4207.779 kb on + strandat 4207.784 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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4,205,139 + +0.0
4,205,159 + -0.4
4,205,165 + -0.5
4,205,166 - -0.8
4,205,166 - -0.3
4,205,184 - +0.3
4,205,202 - -0.3
4,205,214 - -0.5
4,205,216 - -0.3
4,205,294 - +0.5
4,205,307 + -0.4
4,205,307 + -0.2
4,205,314 + +0.0
4,205,317 + -0.2
4,205,318 - +0.1
4,205,318 - -0.7
4,205,318 - +0.7
4,205,397 + CA264_18080 0.22 -1.4
4,205,397 + CA264_18080 0.22 -0.3
4,205,397 + CA264_18080 0.22 +0.3
4,205,398 - CA264_18080 0.22 -0.0
4,205,421 - CA264_18080 0.26 -0.4
4,205,421 - CA264_18080 0.26 +1.1
4,205,627 + CA264_18080 0.61 -0.3
4,205,627 + CA264_18080 0.61 -0.6
4,205,628 - CA264_18080 0.61 +0.2
4,205,628 - CA264_18080 0.61 -0.6
4,205,794 + CA264_18080 0.89 +1.2
4,205,851 + -0.4
4,205,855 - -0.6
4,205,875 - -0.0
4,205,982 + -0.5
4,206,002 - -1.4
4,206,002 - -0.9
4,206,012 + -0.6
4,206,025 + -0.3
4,206,105 + CA264_18085 0.13 +0.3
4,206,134 - CA264_18085 0.16 +0.2
4,206,134 - CA264_18085 0.16 -0.9
4,206,276 - CA264_18085 0.34 +0.7
4,206,316 + CA264_18085 0.40 +0.2
4,206,393 - CA264_18085 0.49 +0.1
4,206,410 - CA264_18085 0.52 +0.3
4,206,416 - CA264_18085 0.52 -0.3
4,206,509 - CA264_18085 0.64 +0.2
4,206,509 - CA264_18085 0.64 -0.4
4,206,687 + CA264_18085 0.87 +0.2
4,206,815 + +0.9
4,206,861 + -0.6
4,206,861 + -0.2
4,206,883 + -0.4
4,206,899 - +0.4
4,206,899 - +0.1
4,206,902 + +0.6
4,206,903 - -0.1
4,206,942 + +0.9
4,206,943 - +0.3
4,206,943 - -1.2
4,206,980 + -0.4
4,207,002 - -0.6
4,207,127 - +0.1
4,207,127 - +0.6
4,207,162 + -0.1
4,207,166 - +0.1
4,207,167 + -0.1
4,207,168 - -0.3
4,207,302 + CA264_18090 0.22 -0.4
4,207,303 - CA264_18090 0.22 -0.1
4,207,303 - CA264_18090 0.22 -0.2
4,207,320 + CA264_18090 0.25 +0.4
4,207,321 - CA264_18090 0.25 +0.6
4,207,415 + CA264_18090 0.41 +0.5
4,207,415 + CA264_18090 0.41 +0.4
4,207,582 + CA264_18090 0.70 -0.2
4,207,583 - CA264_18090 0.70 -0.1
4,207,649 + CA264_18090 0.82 -0.5
4,207,650 - CA264_18090 0.82 -0.2
4,207,650 - CA264_18090 0.82 +1.4
4,207,753 + -1.4
4,207,754 - -0.4
4,207,754 - +2.3
4,207,775 + +0.4
4,207,776 - +0.2
4,207,779 + +0.0
4,207,784 + -0.2

Or see this region's nucleotide sequence