Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17305

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17300 and CA264_17305 are separated by 202 nucleotidesCA264_17305 and CA264_17310 are separated by 197 nucleotides CA264_17300: CA264_17300 - cation/H(+) antiporter, at 4,027,131 to 4,029,200 _17300 CA264_17305: CA264_17305 - hypothetical protein, at 4,029,403 to 4,029,861 _17305 CA264_17310: CA264_17310 - hypothetical protein, at 4,030,059 to 4,031,195 _17310 Position (kb) 4029 4030Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4028.444 kb on + strand, within CA264_17300at 4028.444 kb on + strand, within CA264_17300at 4028.445 kb on - strand, within CA264_17300at 4028.445 kb on - strand, within CA264_17300at 4028.445 kb on - strand, within CA264_17300at 4028.468 kb on - strand, within CA264_17300at 4028.468 kb on - strand, within CA264_17300at 4028.507 kb on + strand, within CA264_17300at 4028.507 kb on + strand, within CA264_17300at 4028.508 kb on - strand, within CA264_17300at 4028.508 kb on - strand, within CA264_17300at 4028.570 kb on + strand, within CA264_17300at 4028.571 kb on - strand, within CA264_17300at 4028.712 kb on - strand, within CA264_17300at 4028.712 kb on - strand, within CA264_17300at 4028.712 kb on - strand, within CA264_17300at 4028.889 kb on - strand, within CA264_17300at 4028.893 kb on + strand, within CA264_17300at 4029.008 kb on + strandat 4029.008 kb on + strandat 4029.009 kb on - strandat 4029.066 kb on + strandat 4029.066 kb on + strandat 4029.067 kb on - strandat 4029.171 kb on + strandat 4029.197 kb on - strandat 4029.197 kb on - strandat 4029.197 kb on - strandat 4029.197 kb on - strandat 4029.250 kb on + strandat 4029.306 kb on + strandat 4029.397 kb on + strandat 4029.397 kb on + strandat 4029.397 kb on + strandat 4029.397 kb on + strandat 4029.398 kb on - strandat 4029.398 kb on - strandat 4029.575 kb on - strand, within CA264_17305at 4029.575 kb on - strand, within CA264_17305at 4029.779 kb on - strand, within CA264_17305at 4029.896 kb on + strandat 4029.898 kb on + strandat 4029.899 kb on - strandat 4029.899 kb on - strandat 4029.899 kb on - strandat 4029.899 kb on - strandat 4029.902 kb on + strandat 4029.902 kb on + strandat 4029.902 kb on + strandat 4029.902 kb on + strandat 4029.903 kb on - strandat 4029.903 kb on - strandat 4029.903 kb on - strandat 4030.002 kb on - strandat 4030.002 kb on - strandat 4030.060 kb on + strandat 4030.081 kb on - strandat 4030.175 kb on + strand, within CA264_17310at 4030.283 kb on + strand, within CA264_17310at 4030.284 kb on - strand, within CA264_17310at 4030.318 kb on + strand, within CA264_17310at 4030.318 kb on + strand, within CA264_17310at 4030.483 kb on + strand, within CA264_17310at 4030.521 kb on - strand, within CA264_17310at 4030.577 kb on + strand, within CA264_17310at 4030.578 kb on - strand, within CA264_17310at 4030.578 kb on - strand, within CA264_17310at 4030.583 kb on + strand, within CA264_17310at 4030.605 kb on - strand, within CA264_17310at 4030.618 kb on + strand, within CA264_17310at 4030.636 kb on - strand, within CA264_17310at 4030.637 kb on + strand, within CA264_17310at 4030.671 kb on - strand, within CA264_17310at 4030.676 kb on + strand, within CA264_17310at 4030.677 kb on - strand, within CA264_17310at 4030.703 kb on + strand, within CA264_17310at 4030.728 kb on - strand, within CA264_17310at 4030.844 kb on - strand, within CA264_17310at 4030.848 kb on - strand, within CA264_17310at 4030.848 kb on - strand, within CA264_17310

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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4,028,444 + CA264_17300 0.63 -0.3
4,028,444 + CA264_17300 0.63 +3.1
4,028,445 - CA264_17300 0.63 -0.9
4,028,445 - CA264_17300 0.63 -1.9
4,028,445 - CA264_17300 0.63 -0.0
4,028,468 - CA264_17300 0.65 -0.9
4,028,468 - CA264_17300 0.65 -2.7
4,028,507 + CA264_17300 0.66 +0.4
4,028,507 + CA264_17300 0.66 -0.5
4,028,508 - CA264_17300 0.67 -0.1
4,028,508 - CA264_17300 0.67 -1.3
4,028,570 + CA264_17300 0.70 +0.1
4,028,571 - CA264_17300 0.70 -1.2
4,028,712 - CA264_17300 0.76 -1.7
4,028,712 - CA264_17300 0.76 -0.4
4,028,712 - CA264_17300 0.76 -0.5
4,028,889 - CA264_17300 0.85 +0.1
4,028,893 + CA264_17300 0.85 -1.0
4,029,008 + -0.4
4,029,008 + -0.0
4,029,009 - +0.8
4,029,066 + -0.2
4,029,066 + -0.1
4,029,067 - -0.6
4,029,171 + -0.1
4,029,197 - -0.8
4,029,197 - -0.6
4,029,197 - -1.3
4,029,197 - -1.3
4,029,250 + +0.2
4,029,306 + +0.1
4,029,397 + -1.2
4,029,397 + -0.4
4,029,397 + -0.8
4,029,397 + -0.6
4,029,398 - -0.6
4,029,398 - -0.3
4,029,575 - CA264_17305 0.37 -0.3
4,029,575 - CA264_17305 0.37 -0.8
4,029,779 - CA264_17305 0.82 -1.1
4,029,896 + +0.3
4,029,898 + -0.4
4,029,899 - -0.8
4,029,899 - +0.4
4,029,899 - -0.9
4,029,899 - -0.3
4,029,902 + -0.5
4,029,902 + -0.3
4,029,902 + -0.5
4,029,902 + -0.4
4,029,903 - -0.5
4,029,903 - +1.4
4,029,903 - +0.4
4,030,002 - -0.1
4,030,002 - +0.1
4,030,060 + -0.8
4,030,081 - -0.3
4,030,175 + CA264_17310 0.10 -0.4
4,030,283 + CA264_17310 0.20 +0.2
4,030,284 - CA264_17310 0.20 -1.4
4,030,318 + CA264_17310 0.23 +1.1
4,030,318 + CA264_17310 0.23 +0.2
4,030,483 + CA264_17310 0.37 -0.6
4,030,521 - CA264_17310 0.41 -1.5
4,030,577 + CA264_17310 0.46 +0.1
4,030,578 - CA264_17310 0.46 -0.8
4,030,578 - CA264_17310 0.46 +0.2
4,030,583 + CA264_17310 0.46 -0.1
4,030,605 - CA264_17310 0.48 -0.4
4,030,618 + CA264_17310 0.49 -0.4
4,030,636 - CA264_17310 0.51 -1.2
4,030,637 + CA264_17310 0.51 -1.9
4,030,671 - CA264_17310 0.54 +0.5
4,030,676 + CA264_17310 0.54 +0.6
4,030,677 - CA264_17310 0.54 -0.7
4,030,703 + CA264_17310 0.57 -1.8
4,030,728 - CA264_17310 0.59 +0.3
4,030,844 - CA264_17310 0.69 -0.5
4,030,848 - CA264_17310 0.69 +0.0
4,030,848 - CA264_17310 0.69 -0.8

Or see this region's nucleotide sequence