Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15355

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15345 and CA264_15350 are separated by 9 nucleotidesCA264_15350 and CA264_15355 are separated by 181 nucleotidesCA264_15355 and CA264_15360 are separated by 246 nucleotides CA264_15345: CA264_15345 - ferrous iron transporter B, at 3,594,232 to 3,596,385 _15345 CA264_15350: CA264_15350 - ferrous iron transport protein A, at 3,596,395 to 3,596,646 _15350 CA264_15355: CA264_15355 - bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase, at 3,596,828 to 3,599,284 _15355 CA264_15360: CA264_15360 - permease, at 3,599,531 to 3,600,478 _15360 Position (kb) 3596 3597 3598 3599 3600Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3596.377 kb on + strandat 3596.651 kb on + strandat 3596.661 kb on + strandat 3596.984 kb on + strandat 3596.996 kb on - strandat 3596.996 kb on - strandat 3597.329 kb on - strand, within CA264_15355at 3597.567 kb on + strand, within CA264_15355at 3597.621 kb on + strand, within CA264_15355at 3598.569 kb on - strand, within CA264_15355at 3599.107 kb on - strandat 3599.334 kb on + strandat 3599.513 kb on + strandat 3599.514 kb on - strandat 3599.516 kb on - strandat 3599.543 kb on - strandat 3599.559 kb on - strandat 3599.585 kb on - strandat 3599.596 kb on + strandat 3599.596 kb on + strandat 3599.736 kb on + strand, within CA264_15360at 3599.828 kb on + strand, within CA264_15360at 3599.842 kb on + strand, within CA264_15360at 3599.849 kb on - strand, within CA264_15360at 3599.887 kb on + strand, within CA264_15360at 3600.024 kb on + strand, within CA264_15360at 3600.044 kb on + strand, within CA264_15360at 3600.045 kb on - strand, within CA264_15360at 3600.139 kb on + strand, within CA264_15360

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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3,596,377 + +0.1
3,596,651 + +2.8
3,596,661 + +2.7
3,596,984 + -0.8
3,596,996 - -1.3
3,596,996 - -2.2
3,597,329 - CA264_15355 0.20 -4.1
3,597,567 + CA264_15355 0.30 -0.8
3,597,621 + CA264_15355 0.32 -1.2
3,598,569 - CA264_15355 0.71 -1.1
3,599,107 - -2.1
3,599,334 + +0.9
3,599,513 + +0.3
3,599,514 - +0.8
3,599,516 - +1.5
3,599,543 - -2.7
3,599,559 - -0.2
3,599,585 - -0.1
3,599,596 + -0.3
3,599,596 + -0.4
3,599,736 + CA264_15360 0.22 +0.5
3,599,828 + CA264_15360 0.31 -0.2
3,599,842 + CA264_15360 0.33 -0.4
3,599,849 - CA264_15360 0.34 -0.6
3,599,887 + CA264_15360 0.38 -0.5
3,600,024 + CA264_15360 0.52 -1.9
3,600,044 + CA264_15360 0.54 -0.2
3,600,045 - CA264_15360 0.54 -0.4
3,600,139 + CA264_15360 0.64 -1.5

Or see this region's nucleotide sequence