Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15065

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15060 and CA264_15065 are separated by 239 nucleotidesCA264_15065 and CA264_15070 are separated by 107 nucleotidesCA264_15070 and CA264_15075 are separated by 72 nucleotides CA264_15060: CA264_15060 - long-chain fatty acid--CoA ligase, at 3,536,036 to 3,537,793 _15060 CA264_15065: CA264_15065 - formiminoglutamase, at 3,538,033 to 3,539,199 _15065 CA264_15070: CA264_15070 - cytochrome b5, at 3,539,307 to 3,539,567 _15070 CA264_15075: CA264_15075 - hypothetical protein, at 3,539,640 to 3,540,506 _15075 Position (kb) 3538 3539 3540Strain fitness (log2 ratio) -2 -1 0 1 2at 3537.072 kb on + strand, within CA264_15060at 3537.072 kb on + strand, within CA264_15060at 3537.073 kb on - strand, within CA264_15060at 3537.076 kb on - strand, within CA264_15060at 3537.076 kb on - strand, within CA264_15060at 3537.076 kb on - strand, within CA264_15060at 3537.080 kb on - strand, within CA264_15060at 3537.080 kb on - strand, within CA264_15060at 3537.099 kb on + strand, within CA264_15060at 3537.106 kb on - strand, within CA264_15060at 3537.106 kb on - strand, within CA264_15060at 3537.265 kb on - strand, within CA264_15060at 3537.265 kb on - strand, within CA264_15060at 3537.269 kb on - strand, within CA264_15060at 3537.269 kb on - strand, within CA264_15060at 3537.269 kb on - strand, within CA264_15060at 3537.377 kb on + strand, within CA264_15060at 3537.394 kb on - strand, within CA264_15060at 3537.518 kb on + strand, within CA264_15060at 3537.604 kb on + strand, within CA264_15060at 3537.604 kb on + strand, within CA264_15060at 3537.604 kb on + strand, within CA264_15060at 3537.611 kb on + strand, within CA264_15060at 3537.824 kb on + strandat 3537.825 kb on - strandat 3537.825 kb on - strandat 3537.825 kb on - strandat 3537.825 kb on - strandat 3537.825 kb on - strandat 3537.828 kb on + strandat 3537.918 kb on - strandat 3537.940 kb on - strandat 3537.946 kb on - strandat 3537.953 kb on + strandat 3537.958 kb on - strandat 3537.958 kb on - strandat 3537.986 kb on - strandat 3537.994 kb on + strandat 3538.010 kb on + strandat 3538.011 kb on - strandat 3538.033 kb on - strandat 3538.342 kb on + strand, within CA264_15065at 3538.427 kb on - strand, within CA264_15065at 3538.724 kb on + strand, within CA264_15065at 3538.865 kb on - strand, within CA264_15065at 3538.871 kb on - strand, within CA264_15065at 3539.284 kb on + strandat 3539.285 kb on - strandat 3539.302 kb on - strandat 3539.302 kb on - strandat 3539.382 kb on + strand, within CA264_15070at 3539.397 kb on + strand, within CA264_15070at 3539.398 kb on - strand, within CA264_15070at 3539.398 kb on - strand, within CA264_15070at 3539.404 kb on + strand, within CA264_15070at 3539.404 kb on + strand, within CA264_15070at 3539.404 kb on + strand, within CA264_15070at 3539.404 kb on + strand, within CA264_15070at 3539.405 kb on - strand, within CA264_15070at 3539.405 kb on - strand, within CA264_15070at 3539.405 kb on - strand, within CA264_15070at 3539.477 kb on - strand, within CA264_15070at 3539.565 kb on + strandat 3539.566 kb on - strandat 3539.589 kb on + strandat 3539.590 kb on - strandat 3539.590 kb on - strandat 3539.601 kb on - strandat 3539.618 kb on + strandat 3539.628 kb on + strandat 3539.628 kb on + strandat 3539.632 kb on + strandat 3539.632 kb on + strandat 3539.632 kb on + strandat 3539.633 kb on - strandat 3539.634 kb on + strandat 3539.634 kb on + strandat 3539.635 kb on - strandat 3539.635 kb on - strandat 3539.648 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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3,537,072 + CA264_15060 0.59 -0.5
3,537,072 + CA264_15060 0.59 -0.2
3,537,073 - CA264_15060 0.59 -0.3
3,537,076 - CA264_15060 0.59 -0.3
3,537,076 - CA264_15060 0.59 -0.8
3,537,076 - CA264_15060 0.59 -0.3
3,537,080 - CA264_15060 0.59 -0.4
3,537,080 - CA264_15060 0.59 +0.7
3,537,099 + CA264_15060 0.60 -0.4
3,537,106 - CA264_15060 0.61 -0.8
3,537,106 - CA264_15060 0.61 -0.8
3,537,265 - CA264_15060 0.70 -0.4
3,537,265 - CA264_15060 0.70 -1.1
3,537,269 - CA264_15060 0.70 +0.0
3,537,269 - CA264_15060 0.70 +0.3
3,537,269 - CA264_15060 0.70 +1.7
3,537,377 + CA264_15060 0.76 -0.3
3,537,394 - CA264_15060 0.77 -0.1
3,537,518 + CA264_15060 0.84 -0.4
3,537,604 + CA264_15060 0.89 -0.4
3,537,604 + CA264_15060 0.89 +1.9
3,537,604 + CA264_15060 0.89 -0.6
3,537,611 + CA264_15060 0.90 -0.2
3,537,824 + -1.7
3,537,825 - +0.3
3,537,825 - +0.0
3,537,825 - +0.4
3,537,825 - +0.7
3,537,825 - -0.0
3,537,828 + -0.0
3,537,918 - +0.6
3,537,940 - -0.4
3,537,946 - +1.1
3,537,953 + -0.8
3,537,958 - -1.7
3,537,958 - -0.1
3,537,986 - +0.3
3,537,994 + -0.6
3,538,010 + +1.3
3,538,011 - -1.5
3,538,033 - -0.5
3,538,342 + CA264_15065 0.26 -0.2
3,538,427 - CA264_15065 0.34 +0.2
3,538,724 + CA264_15065 0.59 -0.5
3,538,865 - CA264_15065 0.71 -1.4
3,538,871 - CA264_15065 0.72 -2.1
3,539,284 + +0.8
3,539,285 - +0.3
3,539,302 - +0.5
3,539,302 - +0.1
3,539,382 + CA264_15070 0.29 +1.2
3,539,397 + CA264_15070 0.34 +0.3
3,539,398 - CA264_15070 0.35 -1.0
3,539,398 - CA264_15070 0.35 -0.1
3,539,404 + CA264_15070 0.37 -0.1
3,539,404 + CA264_15070 0.37 +0.1
3,539,404 + CA264_15070 0.37 +0.4
3,539,404 + CA264_15070 0.37 -0.0
3,539,405 - CA264_15070 0.38 +0.8
3,539,405 - CA264_15070 0.38 +0.0
3,539,405 - CA264_15070 0.38 +0.5
3,539,477 - CA264_15070 0.65 +0.0
3,539,565 + +0.5
3,539,566 - -0.4
3,539,589 + -0.3
3,539,590 - -0.4
3,539,590 - -0.0
3,539,601 - -0.4
3,539,618 + +0.4
3,539,628 + +0.2
3,539,628 + -0.5
3,539,632 + -0.0
3,539,632 + -0.3
3,539,632 + -0.0
3,539,633 - +0.7
3,539,634 + -0.5
3,539,634 + -0.1
3,539,635 - -0.0
3,539,635 - -1.1
3,539,648 - -0.4

Or see this region's nucleotide sequence