Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14485

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14475 and CA264_14480 are separated by 14 nucleotidesCA264_14480 and CA264_14485 are separated by 182 nucleotidesCA264_14485 and CA264_14490 are separated by 42 nucleotides CA264_14475: CA264_14475 - hypothetical protein, at 3,397,597 to 3,398,550 _14475 CA264_14480: CA264_14480 - large-conductance mechanosensitive channel, at 3,398,565 to 3,399,014 _14480 CA264_14485: CA264_14485 - enoyl-CoA hydratase, at 3,399,197 to 3,399,979 _14485 CA264_14490: CA264_14490 - polysaccharide biosynthesis protein, at 3,400,022 to 3,401,515 _14490 Position (kb) 3399 3400Strain fitness (log2 ratio) -2 -1 0 1at 3398.236 kb on - strand, within CA264_14475at 3398.283 kb on - strand, within CA264_14475at 3398.286 kb on + strand, within CA264_14475at 3398.287 kb on - strand, within CA264_14475at 3398.402 kb on - strand, within CA264_14475at 3398.511 kb on + strandat 3398.511 kb on + strandat 3398.521 kb on + strandat 3398.522 kb on - strandat 3398.566 kb on + strandat 3398.566 kb on + strandat 3398.567 kb on - strandat 3398.576 kb on + strandat 3398.658 kb on - strand, within CA264_14480at 3398.709 kb on - strand, within CA264_14480at 3398.725 kb on - strand, within CA264_14480at 3398.763 kb on + strand, within CA264_14480at 3398.776 kb on + strand, within CA264_14480at 3398.777 kb on - strand, within CA264_14480at 3398.832 kb on + strand, within CA264_14480at 3398.852 kb on + strand, within CA264_14480at 3398.859 kb on + strand, within CA264_14480at 3398.860 kb on - strand, within CA264_14480at 3398.891 kb on + strand, within CA264_14480at 3398.891 kb on + strand, within CA264_14480at 3398.894 kb on + strand, within CA264_14480at 3398.895 kb on - strand, within CA264_14480at 3398.898 kb on - strand, within CA264_14480at 3399.019 kb on - strandat 3399.027 kb on - strandat 3399.030 kb on + strandat 3399.044 kb on + strandat 3399.121 kb on - strandat 3399.121 kb on - strandat 3399.196 kb on + strandat 3399.251 kb on - strandat 3399.251 kb on - strandat 3399.251 kb on - strandat 3399.275 kb on - strandat 3399.295 kb on + strand, within CA264_14485at 3399.296 kb on - strand, within CA264_14485at 3399.346 kb on - strand, within CA264_14485at 3399.626 kb on + strand, within CA264_14485at 3399.683 kb on - strand, within CA264_14485at 3399.925 kb on - strandat 3399.955 kb on + strandat 3399.955 kb on + strandat 3399.956 kb on - strandat 3399.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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3,398,236 - CA264_14475 0.67 +0.6
3,398,283 - CA264_14475 0.72 +0.6
3,398,286 + CA264_14475 0.72 +1.0
3,398,287 - CA264_14475 0.72 -0.5
3,398,402 - CA264_14475 0.84 -0.1
3,398,511 + -0.8
3,398,511 + -0.7
3,398,521 + -0.9
3,398,522 - -0.8
3,398,566 + -0.1
3,398,566 + +0.3
3,398,567 - -0.3
3,398,576 + +0.3
3,398,658 - CA264_14480 0.21 -1.4
3,398,709 - CA264_14480 0.32 -0.9
3,398,725 - CA264_14480 0.36 -1.7
3,398,763 + CA264_14480 0.44 -0.1
3,398,776 + CA264_14480 0.47 -0.9
3,398,777 - CA264_14480 0.47 -0.5
3,398,832 + CA264_14480 0.59 -0.3
3,398,852 + CA264_14480 0.64 -1.5
3,398,859 + CA264_14480 0.65 +0.4
3,398,860 - CA264_14480 0.66 -0.0
3,398,891 + CA264_14480 0.72 -0.3
3,398,891 + CA264_14480 0.72 +1.0
3,398,894 + CA264_14480 0.73 -1.0
3,398,895 - CA264_14480 0.73 -0.3
3,398,898 - CA264_14480 0.74 +0.0
3,399,019 - -0.3
3,399,027 - -0.2
3,399,030 + -0.4
3,399,044 + +0.7
3,399,121 - +0.1
3,399,121 - +0.2
3,399,196 + -0.3
3,399,251 - +0.2
3,399,251 - -0.7
3,399,251 - -0.5
3,399,275 - +0.6
3,399,295 + CA264_14485 0.13 -0.5
3,399,296 - CA264_14485 0.13 -2.2
3,399,346 - CA264_14485 0.19 -0.5
3,399,626 + CA264_14485 0.55 -1.0
3,399,683 - CA264_14485 0.62 -0.8
3,399,925 - -0.4
3,399,955 + -0.7
3,399,955 + +0.1
3,399,956 - -1.3
3,399,978 - +0.6

Or see this region's nucleotide sequence