Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12155

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12150 and CA264_12155 are separated by 266 nucleotidesCA264_12155 and CA264_12160 are separated by 315 nucleotidesCA264_12160 and CA264_12165 overlap by 17 nucleotides CA264_12150: CA264_12150 - hypothetical protein, at 2,834,077 to 2,834,874 _12150 CA264_12155: CA264_12155 - histidine phosphatase family protein, at 2,835,141 to 2,835,725 _12155 CA264_12160: CA264_12160 - transcriptional regulator, at 2,836,041 to 2,836,439 _12160 CA264_12165: CA264_12165 - hypothetical protein, at 2,836,423 to 2,837,733 _12165 Position (kb) 2835 2836Strain fitness (log2 ratio) -2 -1 0 1at 2834.791 kb on + strand, within CA264_12150at 2834.818 kb on - strandat 2834.839 kb on - strandat 2835.035 kb on + strandat 2835.243 kb on + strand, within CA264_12155at 2835.245 kb on + strand, within CA264_12155at 2836.020 kb on + strandat 2836.149 kb on + strand, within CA264_12160at 2836.230 kb on + strand, within CA264_12160at 2836.433 kb on + strandat 2836.434 kb on - strandat 2836.441 kb on + strandat 2836.442 kb on - strandat 2836.442 kb on - strandat 2836.534 kb on + strandat 2836.592 kb on + strand, within CA264_12165

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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2,834,791 + CA264_12150 0.89 -0.8
2,834,818 - -0.3
2,834,839 - -0.0
2,835,035 + -0.9
2,835,243 + CA264_12155 0.17 -0.1
2,835,245 + CA264_12155 0.18 -2.6
2,836,020 + -1.2
2,836,149 + CA264_12160 0.27 -0.6
2,836,230 + CA264_12160 0.47 -0.5
2,836,433 + -1.5
2,836,434 - -0.6
2,836,441 + -0.4
2,836,442 - -0.8
2,836,442 - -0.9
2,836,534 + -0.6
2,836,592 + CA264_12165 0.13 -0.6

Or see this region's nucleotide sequence