Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09960

Experiment: m.b. Nalidixic 0.016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_09950 and CA264_09955 are separated by 10 nucleotidesCA264_09955 and CA264_09960 overlap by 4 nucleotidesCA264_09960 and CA264_09965 are separated by 51 nucleotidesCA264_09965 and CA264_09970 overlap by 19 nucleotides CA264_09950: CA264_09950 - conjugative transposon protein TraJ, at 2,317,188 to 2,318,399 _09950 CA264_09955: CA264_09955 - hypothetical protein, at 2,318,410 to 2,319,039 _09955 CA264_09960: CA264_09960 - hypothetical protein, at 2,319,036 to 2,319,689 _09960 CA264_09965: CA264_09965 - conjugal transfer protein TraI, at 2,319,741 to 2,320,418 _09965 CA264_09970: CA264_09970 - conjugal transfer protein TraG, at 2,320,400 to 2,322,910 _09970 Position (kb) 2319 2320Strain fitness (log2 ratio) -2 -1 0 1at 2318.124 kb on + strand, within CA264_09950at 2318.373 kb on + strandat 2318.374 kb on - strandat 2318.376 kb on + strandat 2318.376 kb on + strandat 2318.376 kb on + strandat 2318.377 kb on - strandat 2318.421 kb on + strandat 2318.669 kb on + strand, within CA264_09955at 2318.800 kb on + strand, within CA264_09955at 2318.800 kb on + strand, within CA264_09955at 2318.801 kb on - strand, within CA264_09955at 2319.457 kb on + strand, within CA264_09960at 2319.457 kb on + strand, within CA264_09960at 2319.458 kb on - strand, within CA264_09960at 2319.544 kb on + strand, within CA264_09960at 2319.545 kb on - strand, within CA264_09960at 2319.545 kb on - strand, within CA264_09960at 2319.587 kb on - strand, within CA264_09960at 2319.673 kb on - strandat 2319.673 kb on - strandat 2319.673 kb on - strandat 2319.689 kb on + strandat 2319.689 kb on + strandat 2319.713 kb on + strandat 2319.714 kb on - strandat 2319.942 kb on + strand, within CA264_09965at 2319.942 kb on + strand, within CA264_09965at 2319.997 kb on + strand, within CA264_09965at 2319.998 kb on - strand, within CA264_09965at 2320.298 kb on + strand, within CA264_09965at 2320.392 kb on + strandat 2320.393 kb on - strandat 2320.393 kb on - strandat 2320.393 kb on - strandat 2320.402 kb on - strandat 2320.516 kb on - strandat 2320.523 kb on + strandat 2320.523 kb on + strandat 2320.523 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
remove
2,318,124 + CA264_09950 0.77 +0.3
2,318,373 + +0.3
2,318,374 - -0.9
2,318,376 + +0.0
2,318,376 + +1.4
2,318,376 + -0.4
2,318,377 - +0.6
2,318,421 + -0.7
2,318,669 + CA264_09955 0.41 -1.8
2,318,800 + CA264_09955 0.62 +0.0
2,318,800 + CA264_09955 0.62 -0.4
2,318,801 - CA264_09955 0.62 -0.3
2,319,457 + CA264_09960 0.64 -1.6
2,319,457 + CA264_09960 0.64 -0.5
2,319,458 - CA264_09960 0.65 -1.7
2,319,544 + CA264_09960 0.78 -0.3
2,319,545 - CA264_09960 0.78 -0.4
2,319,545 - CA264_09960 0.78 -0.4
2,319,587 - CA264_09960 0.84 -0.9
2,319,673 - -0.6
2,319,673 - -1.0
2,319,673 - -0.9
2,319,689 + -0.3
2,319,689 + -1.3
2,319,713 + +0.6
2,319,714 - +0.9
2,319,942 + CA264_09965 0.30 -0.2
2,319,942 + CA264_09965 0.30 -0.5
2,319,997 + CA264_09965 0.38 +1.6
2,319,998 - CA264_09965 0.38 -0.4
2,320,298 + CA264_09965 0.82 +0.9
2,320,392 + -0.0
2,320,393 - -0.7
2,320,393 - +0.0
2,320,393 - +0.8
2,320,402 - -0.1
2,320,516 - +0.0
2,320,523 + +0.6
2,320,523 + -0.1
2,320,523 + +0.5

Or see this region's nucleotide sequence