Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09935

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09925 and CA264_09930 are separated by 53 nucleotidesCA264_09930 and CA264_09935 are separated by 37 nucleotidesCA264_09935 and CA264_09940 are separated by 54 nucleotides CA264_09925: CA264_09925 - hypothetical protein, at 2,313,157 to 2,313,462 _09925 CA264_09930: CA264_09930 - hypothetical protein, at 2,313,516 to 2,314,304 _09930 CA264_09935: CA264_09935 - conjugative transposon protein TraN, at 2,314,342 to 2,315,187 _09935 CA264_09940: CA264_09940 - conjugative transposon protein TraM, at 2,315,242 to 2,316,486 _09940 Position (kb) 2314 2315 2316Strain fitness (log2 ratio) -2 -1 0 1at 2313.419 kb on - strand, within CA264_09925at 2313.419 kb on - strand, within CA264_09925at 2313.419 kb on - strand, within CA264_09925at 2313.481 kb on - strandat 2313.692 kb on + strand, within CA264_09930at 2313.692 kb on + strand, within CA264_09930at 2313.692 kb on + strand, within CA264_09930at 2313.694 kb on + strand, within CA264_09930at 2313.694 kb on + strand, within CA264_09930at 2313.741 kb on + strand, within CA264_09930at 2313.741 kb on + strand, within CA264_09930at 2313.865 kb on + strand, within CA264_09930at 2313.865 kb on + strand, within CA264_09930at 2313.866 kb on - strand, within CA264_09930at 2313.893 kb on - strand, within CA264_09930at 2313.943 kb on + strand, within CA264_09930at 2313.944 kb on - strand, within CA264_09930at 2314.004 kb on - strand, within CA264_09930at 2314.022 kb on + strand, within CA264_09930at 2314.023 kb on - strand, within CA264_09930at 2314.023 kb on - strand, within CA264_09930at 2314.023 kb on - strand, within CA264_09930at 2314.042 kb on + strand, within CA264_09930at 2314.166 kb on + strand, within CA264_09930at 2314.172 kb on - strand, within CA264_09930at 2314.172 kb on - strand, within CA264_09930at 2314.172 kb on - strand, within CA264_09930at 2314.261 kb on + strandat 2314.261 kb on + strandat 2314.283 kb on - strandat 2314.330 kb on + strandat 2314.331 kb on - strandat 2314.331 kb on - strandat 2314.348 kb on + strandat 2314.349 kb on - strandat 2314.396 kb on - strandat 2314.471 kb on - strand, within CA264_09935at 2314.501 kb on - strand, within CA264_09935at 2314.532 kb on + strand, within CA264_09935at 2314.532 kb on + strand, within CA264_09935at 2314.595 kb on + strand, within CA264_09935at 2314.595 kb on + strand, within CA264_09935at 2314.595 kb on + strand, within CA264_09935at 2314.596 kb on - strand, within CA264_09935at 2314.617 kb on + strand, within CA264_09935at 2315.017 kb on + strand, within CA264_09935at 2315.145 kb on + strandat 2315.212 kb on + strandat 2315.213 kb on - strandat 2315.213 kb on - strandat 2315.214 kb on + strandat 2315.215 kb on - strandat 2315.215 kb on - strandat 2315.244 kb on - strandat 2315.460 kb on - strand, within CA264_09940at 2315.460 kb on - strand, within CA264_09940at 2315.529 kb on + strand, within CA264_09940at 2315.529 kb on + strand, within CA264_09940at 2315.621 kb on - strand, within CA264_09940at 2315.786 kb on - strand, within CA264_09940at 2315.794 kb on + strand, within CA264_09940at 2315.998 kb on + strand, within CA264_09940at 2316.098 kb on + strand, within CA264_09940at 2316.099 kb on - strand, within CA264_09940at 2316.099 kb on - strand, within CA264_09940

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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2,313,419 - CA264_09925 0.86 -0.3
2,313,419 - CA264_09925 0.86 +0.0
2,313,419 - CA264_09925 0.86 -0.5
2,313,481 - +0.6
2,313,692 + CA264_09930 0.22 -0.2
2,313,692 + CA264_09930 0.22 +0.4
2,313,692 + CA264_09930 0.22 -1.0
2,313,694 + CA264_09930 0.23 +0.3
2,313,694 + CA264_09930 0.23 -0.1
2,313,741 + CA264_09930 0.29 +0.2
2,313,741 + CA264_09930 0.29 -0.4
2,313,865 + CA264_09930 0.44 -0.1
2,313,865 + CA264_09930 0.44 -0.8
2,313,866 - CA264_09930 0.44 -1.5
2,313,893 - CA264_09930 0.48 -0.0
2,313,943 + CA264_09930 0.54 +0.3
2,313,944 - CA264_09930 0.54 -0.9
2,314,004 - CA264_09930 0.62 -1.3
2,314,022 + CA264_09930 0.64 -0.3
2,314,023 - CA264_09930 0.64 +0.0
2,314,023 - CA264_09930 0.64 +0.0
2,314,023 - CA264_09930 0.64 +0.0
2,314,042 + CA264_09930 0.67 -1.1
2,314,166 + CA264_09930 0.82 -0.5
2,314,172 - CA264_09930 0.83 -0.9
2,314,172 - CA264_09930 0.83 +0.2
2,314,172 - CA264_09930 0.83 -0.1
2,314,261 + +0.6
2,314,261 + -0.5
2,314,283 - -0.2
2,314,330 + +0.2
2,314,331 - -2.1
2,314,331 - -0.8
2,314,348 + -1.0
2,314,349 - -1.7
2,314,396 - -0.9
2,314,471 - CA264_09935 0.15 -0.5
2,314,501 - CA264_09935 0.19 -1.3
2,314,532 + CA264_09935 0.22 +0.5
2,314,532 + CA264_09935 0.22 -1.2
2,314,595 + CA264_09935 0.30 -0.2
2,314,595 + CA264_09935 0.30 +0.2
2,314,595 + CA264_09935 0.30 -0.8
2,314,596 - CA264_09935 0.30 -1.0
2,314,617 + CA264_09935 0.33 +0.8
2,315,017 + CA264_09935 0.80 -1.0
2,315,145 + -0.8
2,315,212 + -0.4
2,315,213 - -0.4
2,315,213 - -0.1
2,315,214 + -0.2
2,315,215 - -1.2
2,315,215 - -2.3
2,315,244 - -0.3
2,315,460 - CA264_09940 0.18 +0.3
2,315,460 - CA264_09940 0.18 -0.3
2,315,529 + CA264_09940 0.23 -0.8
2,315,529 + CA264_09940 0.23 -0.5
2,315,621 - CA264_09940 0.30 -0.5
2,315,786 - CA264_09940 0.44 -1.2
2,315,794 + CA264_09940 0.44 -0.6
2,315,998 + CA264_09940 0.61 -0.6
2,316,098 + CA264_09940 0.69 +0.2
2,316,099 - CA264_09940 0.69 -0.8
2,316,099 - CA264_09940 0.69 +0.2

Or see this region's nucleotide sequence