Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09700

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09695 and CA264_09700 are separated by 132 nucleotidesCA264_09700 and CA264_09705 are separated by 457 nucleotides CA264_09695: CA264_09695 - integrase, at 2,252,497 to 2,253,924 _09695 CA264_09700: CA264_09700 - hypothetical protein, at 2,254,057 to 2,254,311 _09700 CA264_09705: CA264_09705 - NAD-dependent dehydratase, at 2,254,769 to 2,255,836 _09705 Position (kb) 2254 2255Strain fitness (log2 ratio) -2 -1 0 1 2at 2253.064 kb on + strand, within CA264_09695at 2253.070 kb on + strand, within CA264_09695at 2253.070 kb on + strand, within CA264_09695at 2253.102 kb on - strand, within CA264_09695at 2253.130 kb on + strand, within CA264_09695at 2253.130 kb on + strand, within CA264_09695at 2253.130 kb on + strand, within CA264_09695at 2253.133 kb on - strand, within CA264_09695at 2253.177 kb on - strand, within CA264_09695at 2253.231 kb on + strand, within CA264_09695at 2253.232 kb on - strand, within CA264_09695at 2253.266 kb on + strand, within CA264_09695at 2253.291 kb on - strand, within CA264_09695at 2253.291 kb on - strand, within CA264_09695at 2253.338 kb on + strand, within CA264_09695at 2253.339 kb on - strand, within CA264_09695at 2253.513 kb on + strand, within CA264_09695at 2253.513 kb on + strand, within CA264_09695at 2253.513 kb on + strand, within CA264_09695at 2253.513 kb on + strand, within CA264_09695at 2253.514 kb on - strand, within CA264_09695at 2253.517 kb on + strand, within CA264_09695at 2253.517 kb on + strand, within CA264_09695at 2253.517 kb on + strand, within CA264_09695at 2253.518 kb on - strand, within CA264_09695at 2253.541 kb on - strand, within CA264_09695at 2253.543 kb on - strand, within CA264_09695at 2253.543 kb on - strand, within CA264_09695at 2253.557 kb on + strand, within CA264_09695at 2253.831 kb on + strandat 2253.924 kb on + strandat 2253.955 kb on + strandat 2253.955 kb on + strandat 2253.956 kb on - strandat 2253.957 kb on + strandat 2253.957 kb on + strandat 2253.957 kb on + strandat 2253.958 kb on - strandat 2253.991 kb on - strandat 2254.012 kb on - strandat 2254.022 kb on - strandat 2254.032 kb on - strandat 2254.032 kb on - strandat 2254.051 kb on + strandat 2254.051 kb on + strandat 2254.052 kb on - strandat 2254.052 kb on - strandat 2254.052 kb on - strandat 2254.052 kb on - strandat 2254.056 kb on + strandat 2254.057 kb on - strandat 2254.276 kb on + strand, within CA264_09700at 2254.277 kb on - strand, within CA264_09700at 2254.344 kb on + strandat 2254.356 kb on + strandat 2254.362 kb on + strandat 2254.369 kb on - strandat 2254.369 kb on - strandat 2254.416 kb on + strandat 2254.416 kb on + strandat 2254.416 kb on + strandat 2254.417 kb on - strandat 2254.417 kb on - strandat 2254.491 kb on - strandat 2254.523 kb on + strandat 2254.542 kb on - strandat 2254.544 kb on + strandat 2254.688 kb on + strandat 2254.688 kb on + strandat 2254.743 kb on + strandat 2254.744 kb on - strandat 2254.888 kb on + strand, within CA264_09705at 2255.098 kb on - strand, within CA264_09705

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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2,253,064 + CA264_09695 0.40 -0.7
2,253,070 + CA264_09695 0.40 +0.7
2,253,070 + CA264_09695 0.40 -0.5
2,253,102 - CA264_09695 0.42 -0.2
2,253,130 + CA264_09695 0.44 +0.3
2,253,130 + CA264_09695 0.44 -0.7
2,253,130 + CA264_09695 0.44 +2.2
2,253,133 - CA264_09695 0.45 -1.2
2,253,177 - CA264_09695 0.48 +0.5
2,253,231 + CA264_09695 0.51 -0.4
2,253,232 - CA264_09695 0.51 +0.7
2,253,266 + CA264_09695 0.54 -0.3
2,253,291 - CA264_09695 0.56 +0.7
2,253,291 - CA264_09695 0.56 -0.2
2,253,338 + CA264_09695 0.59 -0.2
2,253,339 - CA264_09695 0.59 -0.2
2,253,513 + CA264_09695 0.71 -0.2
2,253,513 + CA264_09695 0.71 +0.4
2,253,513 + CA264_09695 0.71 -0.5
2,253,513 + CA264_09695 0.71 -0.7
2,253,514 - CA264_09695 0.71 +0.0
2,253,517 + CA264_09695 0.71 +0.6
2,253,517 + CA264_09695 0.71 -0.7
2,253,517 + CA264_09695 0.71 -0.5
2,253,518 - CA264_09695 0.71 -0.2
2,253,541 - CA264_09695 0.73 -1.3
2,253,543 - CA264_09695 0.73 +1.3
2,253,543 - CA264_09695 0.73 -0.6
2,253,557 + CA264_09695 0.74 -0.5
2,253,831 + +0.1
2,253,924 + -0.1
2,253,955 + +1.1
2,253,955 + -0.4
2,253,956 - -0.5
2,253,957 + -0.0
2,253,957 + +0.4
2,253,957 + +0.2
2,253,958 - -1.7
2,253,991 - -2.4
2,254,012 - +0.1
2,254,022 - -0.9
2,254,032 - -0.7
2,254,032 - -0.0
2,254,051 + -0.3
2,254,051 + -0.2
2,254,052 - -0.9
2,254,052 - -0.1
2,254,052 - +0.3
2,254,052 - -0.6
2,254,056 + -0.2
2,254,057 - -0.1
2,254,276 + CA264_09700 0.86 -1.0
2,254,277 - CA264_09700 0.86 +0.5
2,254,344 + +0.6
2,254,356 + -0.9
2,254,362 + -0.0
2,254,369 - +0.0
2,254,369 - -1.0
2,254,416 + -1.1
2,254,416 + -0.3
2,254,416 + -0.9
2,254,417 - +0.8
2,254,417 - +0.6
2,254,491 - +1.1
2,254,523 + -1.4
2,254,542 - -0.3
2,254,544 + +0.0
2,254,688 + -0.7
2,254,688 + -0.4
2,254,743 + -0.2
2,254,744 - +0.4
2,254,888 + CA264_09705 0.11 -0.5
2,255,098 - CA264_09705 0.31 -0.4

Or see this region's nucleotide sequence