Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08725 and CA264_08730 are separated by 25 nucleotides CA264_08730 and CA264_08735 are separated by 321 nucleotides
CA264_08725: CA264_08725 - hydrophobe/amphiphile efflux-1 family RND transporter, at 2,029,688 to 2,032,855
_08725
CA264_08730: CA264_08730 - efflux transporter periplasmic adaptor subunit, at 2,032,881 to 2,033,963
_08730
CA264_08735: CA264_08735 - hypothetical protein, at 2,034,285 to 2,034,710
_08735
Position (kb)
2032
2033
2034 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2031.948 kb on - strand, within CA264_08725 at 2031.948 kb on - strand, within CA264_08725 at 2032.020 kb on + strand, within CA264_08725 at 2032.020 kb on + strand, within CA264_08725 at 2032.020 kb on + strand, within CA264_08725 at 2032.020 kb on + strand, within CA264_08725 at 2032.021 kb on - strand, within CA264_08725 at 2032.024 kb on + strand, within CA264_08725 at 2032.024 kb on + strand, within CA264_08725 at 2032.024 kb on + strand, within CA264_08725 at 2032.025 kb on - strand, within CA264_08725 at 2032.050 kb on - strand, within CA264_08725 at 2032.073 kb on + strand, within CA264_08725 at 2032.073 kb on + strand, within CA264_08725 at 2032.074 kb on - strand, within CA264_08725 at 2032.074 kb on - strand, within CA264_08725 at 2032.074 kb on - strand, within CA264_08725 at 2032.108 kb on + strand, within CA264_08725 at 2032.108 kb on + strand, within CA264_08725 at 2032.146 kb on + strand, within CA264_08725 at 2032.147 kb on - strand, within CA264_08725 at 2032.150 kb on + strand, within CA264_08725 at 2032.159 kb on - strand, within CA264_08725 at 2032.178 kb on + strand, within CA264_08725 at 2032.296 kb on - strand, within CA264_08725 at 2032.318 kb on + strand, within CA264_08725 at 2032.424 kb on - strand, within CA264_08725 at 2032.440 kb on + strand, within CA264_08725 at 2032.450 kb on + strand, within CA264_08725 at 2032.450 kb on + strand, within CA264_08725 at 2032.451 kb on - strand, within CA264_08725 at 2032.451 kb on - strand, within CA264_08725 at 2032.625 kb on - strand at 2032.652 kb on - strand at 2032.762 kb on + strand at 2032.763 kb on - strand at 2032.790 kb on + strand at 2032.791 kb on - strand at 2032.846 kb on + strand at 2032.849 kb on + strand at 2032.882 kb on + strand at 2032.891 kb on + strand at 2032.892 kb on - strand at 2032.893 kb on + strand at 2032.893 kb on + strand at 2032.989 kb on - strand at 2033.013 kb on + strand, within CA264_08730 at 2033.021 kb on - strand, within CA264_08730 at 2033.063 kb on + strand, within CA264_08730 at 2033.063 kb on + strand, within CA264_08730 at 2033.064 kb on - strand, within CA264_08730 at 2033.089 kb on + strand, within CA264_08730 at 2033.089 kb on + strand, within CA264_08730 at 2033.090 kb on - strand, within CA264_08730 at 2033.090 kb on - strand, within CA264_08730 at 2033.090 kb on - strand, within CA264_08730 at 2033.095 kb on + strand, within CA264_08730 at 2033.095 kb on + strand, within CA264_08730 at 2033.095 kb on + strand, within CA264_08730 at 2033.095 kb on + strand, within CA264_08730 at 2033.095 kb on + strand, within CA264_08730 at 2033.095 kb on + strand, within CA264_08730 at 2033.096 kb on - strand, within CA264_08730 at 2033.096 kb on - strand, within CA264_08730 at 2033.096 kb on - strand, within CA264_08730 at 2033.096 kb on - strand, within CA264_08730 at 2033.389 kb on + strand, within CA264_08730 at 2033.390 kb on - strand, within CA264_08730 at 2033.390 kb on - strand, within CA264_08730 at 2033.392 kb on + strand, within CA264_08730 at 2033.463 kb on + strand, within CA264_08730 at 2033.464 kb on - strand, within CA264_08730 at 2033.686 kb on + strand, within CA264_08730 at 2033.764 kb on + strand, within CA264_08730 at 2033.793 kb on - strand, within CA264_08730 at 2033.799 kb on + strand, within CA264_08730 at 2033.801 kb on + strand, within CA264_08730 at 2033.802 kb on - strand, within CA264_08730 at 2033.818 kb on - strand, within CA264_08730 at 2033.858 kb on + strand at 2033.868 kb on - strand at 2033.915 kb on + strand at 2033.993 kb on + strand at 2034.263 kb on + strand at 2034.263 kb on + strand at 2034.264 kb on - strand at 2034.265 kb on + strand at 2034.284 kb on - strand at 2034.284 kb on - strand at 2034.284 kb on - strand at 2034.286 kb on + strand at 2034.287 kb on - strand at 2034.358 kb on - strand, within CA264_08735 at 2034.385 kb on + strand, within CA264_08735 at 2034.421 kb on + strand, within CA264_08735 at 2034.517 kb on + strand, within CA264_08735 at 2034.517 kb on + strand, within CA264_08735 at 2034.517 kb on + strand, within CA264_08735 at 2034.527 kb on - strand, within CA264_08735 at 2034.633 kb on - strand, within CA264_08735 at 2034.640 kb on + strand, within CA264_08735 at 2034.641 kb on - strand, within CA264_08735 at 2034.641 kb on - strand, within CA264_08735 at 2034.643 kb on - strand, within CA264_08735 at 2034.643 kb on - strand, within CA264_08735 at 2034.643 kb on - strand, within CA264_08735 at 2034.643 kb on - strand, within CA264_08735 at 2034.643 kb on - strand, within CA264_08735 at 2034.652 kb on + strand, within CA264_08735 at 2034.674 kb on + strand at 2034.675 kb on - strand at 2034.689 kb on - strand at 2034.725 kb on - strand at 2034.828 kb on + strand at 2034.840 kb on + strand at 2034.840 kb on + strand at 2034.904 kb on - strand at 2034.904 kb on - strand at 2034.915 kb on + strand at 2034.916 kb on - strand at 2034.921 kb on + strand at 2034.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 2,031,948 - CA264_08725 0.71 -0.2 2,031,948 - CA264_08725 0.71 -0.5 2,032,020 + CA264_08725 0.74 +0.1 2,032,020 + CA264_08725 0.74 +1.0 2,032,020 + CA264_08725 0.74 +0.3 2,032,020 + CA264_08725 0.74 -0.2 2,032,021 - CA264_08725 0.74 -0.4 2,032,024 + CA264_08725 0.74 -0.4 2,032,024 + CA264_08725 0.74 -0.7 2,032,024 + CA264_08725 0.74 +0.5 2,032,025 - CA264_08725 0.74 +0.0 2,032,050 - CA264_08725 0.75 -1.6 2,032,073 + CA264_08725 0.75 -0.3 2,032,073 + CA264_08725 0.75 +0.2 2,032,074 - CA264_08725 0.75 -0.1 2,032,074 - CA264_08725 0.75 +0.9 2,032,074 - CA264_08725 0.75 -0.2 2,032,108 + CA264_08725 0.76 +0.2 2,032,108 + CA264_08725 0.76 -0.1 2,032,146 + CA264_08725 0.78 -0.8 2,032,147 - CA264_08725 0.78 -0.2 2,032,150 + CA264_08725 0.78 +0.6 2,032,159 - CA264_08725 0.78 -2.4 2,032,178 + CA264_08725 0.79 +0.1 2,032,296 - CA264_08725 0.82 -1.0 2,032,318 + CA264_08725 0.83 +2.9 2,032,424 - CA264_08725 0.86 +0.6 2,032,440 + CA264_08725 0.87 +2.7 2,032,450 + CA264_08725 0.87 -1.0 2,032,450 + CA264_08725 0.87 +1.0 2,032,451 - CA264_08725 0.87 -1.3 2,032,451 - CA264_08725 0.87 -1.3 2,032,625 - -0.1 2,032,652 - -0.1 2,032,762 + -1.2 2,032,763 - -0.3 2,032,790 + +0.0 2,032,791 - -0.8 2,032,846 + -0.4 2,032,849 + +0.4 2,032,882 + -0.2 2,032,891 + +0.2 2,032,892 - -1.0 2,032,893 + +2.4 2,032,893 + -1.5 2,032,989 - -0.5 2,033,013 + CA264_08730 0.12 -1.2 2,033,021 - CA264_08730 0.13 -0.3 2,033,063 + CA264_08730 0.17 -0.7 2,033,063 + CA264_08730 0.17 -1.7 2,033,064 - CA264_08730 0.17 -0.6 2,033,089 + CA264_08730 0.19 +0.4 2,033,089 + CA264_08730 0.19 -1.5 2,033,090 - CA264_08730 0.19 -0.1 2,033,090 - CA264_08730 0.19 +0.9 2,033,090 - CA264_08730 0.19 -0.2 2,033,095 + CA264_08730 0.20 +1.9 2,033,095 + CA264_08730 0.20 +1.6 2,033,095 + CA264_08730 0.20 +0.1 2,033,095 + CA264_08730 0.20 -1.5 2,033,095 + CA264_08730 0.20 +0.2 2,033,095 + CA264_08730 0.20 +0.6 2,033,096 - CA264_08730 0.20 -1.2 2,033,096 - CA264_08730 0.20 +0.2 2,033,096 - CA264_08730 0.20 -0.3 2,033,096 - CA264_08730 0.20 -0.1 2,033,389 + CA264_08730 0.47 -1.9 2,033,390 - CA264_08730 0.47 -1.2 2,033,390 - CA264_08730 0.47 +0.2 2,033,392 + CA264_08730 0.47 +1.3 2,033,463 + CA264_08730 0.54 +0.2 2,033,464 - CA264_08730 0.54 +0.9 2,033,686 + CA264_08730 0.74 -0.6 2,033,764 + CA264_08730 0.82 -0.4 2,033,793 - CA264_08730 0.84 +0.4 2,033,799 + CA264_08730 0.85 -0.2 2,033,801 + CA264_08730 0.85 +0.1 2,033,802 - CA264_08730 0.85 +0.3 2,033,818 - CA264_08730 0.87 +0.6 2,033,858 + +0.6 2,033,868 - -0.1 2,033,915 + -0.8 2,033,993 + -0.7 2,034,263 + -0.3 2,034,263 + +0.4 2,034,264 - +0.3 2,034,265 + -0.6 2,034,284 - +0.3 2,034,284 - -1.9 2,034,284 - -1.5 2,034,286 + -0.7 2,034,287 - -0.0 2,034,358 - CA264_08735 0.17 -0.4 2,034,385 + CA264_08735 0.23 -0.5 2,034,421 + CA264_08735 0.32 -0.1 2,034,517 + CA264_08735 0.54 -0.4 2,034,517 + CA264_08735 0.54 -0.6 2,034,517 + CA264_08735 0.54 +0.4 2,034,527 - CA264_08735 0.57 +2.0 2,034,633 - CA264_08735 0.82 -0.2 2,034,640 + CA264_08735 0.83 +0.2 2,034,641 - CA264_08735 0.84 +0.2 2,034,641 - CA264_08735 0.84 -0.3 2,034,643 - CA264_08735 0.84 -1.5 2,034,643 - CA264_08735 0.84 +0.1 2,034,643 - CA264_08735 0.84 +0.7 2,034,643 - CA264_08735 0.84 -1.0 2,034,643 - CA264_08735 0.84 -1.7 2,034,652 + CA264_08735 0.86 -0.4 2,034,674 + -1.8 2,034,675 - +1.4 2,034,689 - -0.8 2,034,725 - -0.5 2,034,828 + -0.4 2,034,840 + -0.5 2,034,840 + +0.1 2,034,904 - +0.4 2,034,904 - -0.2 2,034,915 + +1.3 2,034,916 - -1.2 2,034,921 + -1.2 2,034,937 - -0.9
Or see this region's nucleotide sequence