Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07940

Experiment: m.b. Nalidixic 0.016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_07935 and CA264_07940 are separated by 1 nucleotidesCA264_07940 and CA264_07945 are separated by 39 nucleotides CA264_07935: CA264_07935 - hypothetical protein, at 1,835,528 to 1,836,850 _07935 CA264_07940: CA264_07940 - hypothetical protein, at 1,836,852 to 1,837,106 _07940 CA264_07945: CA264_07945 - AMP-binding protein, at 1,837,146 to 1,838,759 _07945 Position (kb) 1836 1837 1838Strain fitness (log2 ratio) -1 0 1at 1836.831 kb on + strandat 1836.848 kb on + strandat 1836.865 kb on + strandat 1836.872 kb on + strandat 1836.873 kb on - strandat 1836.873 kb on - strandat 1836.891 kb on + strand, within CA264_07940at 1836.891 kb on + strand, within CA264_07940at 1836.892 kb on - strand, within CA264_07940at 1836.892 kb on - strand, within CA264_07940at 1836.905 kb on + strand, within CA264_07940at 1836.927 kb on + strand, within CA264_07940at 1837.072 kb on + strand, within CA264_07940at 1837.121 kb on + strandat 1837.122 kb on - strandat 1837.139 kb on + strandat 1837.140 kb on - strandat 1837.143 kb on + strandat 1837.143 kb on + strandat 1837.144 kb on - strandat 1837.154 kb on + strandat 1837.154 kb on + strandat 1837.164 kb on + strandat 1837.164 kb on + strandat 1837.165 kb on - strandat 1837.390 kb on - strand, within CA264_07945at 1837.480 kb on - strand, within CA264_07945at 1837.480 kb on - strand, within CA264_07945at 1837.480 kb on - strand, within CA264_07945at 1837.543 kb on - strand, within CA264_07945at 1837.543 kb on - strand, within CA264_07945at 1837.646 kb on + strand, within CA264_07945at 1837.646 kb on + strand, within CA264_07945at 1837.647 kb on - strand, within CA264_07945at 1837.710 kb on + strand, within CA264_07945at 1837.822 kb on + strand, within CA264_07945at 1837.822 kb on + strand, within CA264_07945at 1837.822 kb on + strand, within CA264_07945at 1837.823 kb on - strand, within CA264_07945at 1837.975 kb on - strand, within CA264_07945at 1838.029 kb on - strand, within CA264_07945at 1838.029 kb on - strand, within CA264_07945at 1838.080 kb on + strand, within CA264_07945at 1838.084 kb on + strand, within CA264_07945at 1838.085 kb on - strand, within CA264_07945

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
remove
1,836,831 + +0.0
1,836,848 + -0.2
1,836,865 + +0.7
1,836,872 + +0.8
1,836,873 - -0.6
1,836,873 - -1.1
1,836,891 + CA264_07940 0.15 -0.1
1,836,891 + CA264_07940 0.15 -0.9
1,836,892 - CA264_07940 0.16 +0.4
1,836,892 - CA264_07940 0.16 +0.3
1,836,905 + CA264_07940 0.21 -1.2
1,836,927 + CA264_07940 0.29 -0.2
1,837,072 + CA264_07940 0.86 +1.3
1,837,121 + -0.8
1,837,122 - +0.5
1,837,139 + -0.3
1,837,140 - -0.1
1,837,143 + +0.0
1,837,143 + +0.7
1,837,144 - +1.3
1,837,154 + -0.0
1,837,154 + -0.2
1,837,164 + +0.1
1,837,164 + -0.6
1,837,165 - -1.0
1,837,390 - CA264_07945 0.15 -1.5
1,837,480 - CA264_07945 0.21 +0.8
1,837,480 - CA264_07945 0.21 +0.2
1,837,480 - CA264_07945 0.21 +0.4
1,837,543 - CA264_07945 0.25 -0.4
1,837,543 - CA264_07945 0.25 -0.3
1,837,646 + CA264_07945 0.31 +0.7
1,837,646 + CA264_07945 0.31 -0.2
1,837,647 - CA264_07945 0.31 -1.3
1,837,710 + CA264_07945 0.35 -0.5
1,837,822 + CA264_07945 0.42 -0.9
1,837,822 + CA264_07945 0.42 +1.0
1,837,822 + CA264_07945 0.42 -0.7
1,837,823 - CA264_07945 0.42 -0.6
1,837,975 - CA264_07945 0.51 -0.5
1,838,029 - CA264_07945 0.55 -1.3
1,838,029 - CA264_07945 0.55 -0.3
1,838,080 + CA264_07945 0.58 -0.2
1,838,084 + CA264_07945 0.58 -0.3
1,838,085 - CA264_07945 0.58 -0.7

Or see this region's nucleotide sequence