Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06100

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06085 and CA264_06090 are separated by 73 nucleotidesCA264_06090 and CA264_06095 are separated by 23 nucleotidesCA264_06095 and CA264_06100 are separated by 112 nucleotidesCA264_06100 and CA264_06105 are separated by 210 nucleotides CA264_06085: CA264_06085 - hypothetical protein, at 1,423,979 to 1,424,596 _06085 CA264_06090: CA264_06090 - hypothetical protein, at 1,424,670 to 1,425,131 _06090 CA264_06095: CA264_06095 - hypothetical protein, at 1,425,155 to 1,425,460 _06095 CA264_06100: CA264_06100 - riboflavin synthase, at 1,425,573 to 1,426,157 _06100 CA264_06105: CA264_06105 - protein-L-isoaspartate O-methyltransferase, at 1,426,368 to 1,427,027 _06105 Position (kb) 1425 1426 1427Strain fitness (log2 ratio) -2 -1 0 1 2at 1424.613 kb on - strandat 1424.617 kb on + strandat 1424.626 kb on + strandat 1424.635 kb on + strandat 1424.642 kb on - strandat 1424.645 kb on + strandat 1424.664 kb on + strandat 1424.689 kb on + strandat 1424.690 kb on - strandat 1424.690 kb on - strandat 1424.690 kb on - strandat 1424.694 kb on + strandat 1424.726 kb on - strand, within CA264_06090at 1424.851 kb on + strand, within CA264_06090at 1424.934 kb on + strand, within CA264_06090at 1424.935 kb on - strand, within CA264_06090at 1424.937 kb on - strand, within CA264_06090at 1425.047 kb on - strand, within CA264_06090at 1425.050 kb on + strand, within CA264_06090at 1425.050 kb on + strand, within CA264_06090at 1425.051 kb on - strandat 1425.051 kb on - strand, within CA264_06090at 1425.095 kb on - strandat 1425.304 kb on + strand, within CA264_06095at 1425.377 kb on + strand, within CA264_06095at 1425.463 kb on + strandat 1425.485 kb on + strandat 1425.486 kb on - strandat 1425.494 kb on + strandat 1425.583 kb on - strandat 1425.595 kb on - strandat 1426.157 kb on + strandat 1426.157 kb on + strandat 1426.329 kb on - strandat 1426.329 kb on - strandat 1426.329 kb on - strandat 1426.329 kb on - strandat 1426.334 kb on + strandat 1426.352 kb on + strandat 1426.352 kb on + strandat 1426.353 kb on - strandat 1426.356 kb on + strandat 1426.357 kb on - strandat 1426.357 kb on - strandat 1426.360 kb on + strandat 1426.617 kb on - strand, within CA264_06105at 1426.674 kb on - strand, within CA264_06105at 1426.698 kb on + strand, within CA264_06105at 1426.881 kb on - strand, within CA264_06105at 1427.025 kb on + strandat 1427.026 kb on - strandat 1427.100 kb on + strandat 1427.120 kb on - strandat 1427.122 kb on - strandat 1427.122 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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1,424,613 - +0.8
1,424,617 + -0.3
1,424,626 + +0.2
1,424,635 + -0.5
1,424,642 - -0.4
1,424,645 + +0.1
1,424,664 + -0.0
1,424,689 + -0.7
1,424,690 - -0.1
1,424,690 - +0.6
1,424,690 - +0.0
1,424,694 + -0.1
1,424,726 - CA264_06090 0.12 +0.8
1,424,851 + CA264_06090 0.39 -0.4
1,424,934 + CA264_06090 0.57 +0.4
1,424,935 - CA264_06090 0.57 +0.5
1,424,937 - CA264_06090 0.58 +0.1
1,425,047 - CA264_06090 0.82 +0.4
1,425,050 + CA264_06090 0.82 +0.9
1,425,050 + CA264_06090 0.82 -0.3
1,425,051 - +0.5
1,425,051 - CA264_06090 0.82 +0.3
1,425,095 - +0.9
1,425,304 + CA264_06095 0.49 +0.4
1,425,377 + CA264_06095 0.73 +2.6
1,425,463 + +0.9
1,425,485 + -0.4
1,425,486 - +0.0
1,425,494 + +0.4
1,425,583 - +0.8
1,425,595 - -0.1
1,426,157 + +0.8
1,426,157 + -1.1
1,426,329 - -0.3
1,426,329 - +0.9
1,426,329 - -1.3
1,426,329 - -0.2
1,426,334 + +0.4
1,426,352 + +1.5
1,426,352 + -0.1
1,426,353 - -0.0
1,426,356 + -0.1
1,426,357 - +0.4
1,426,357 - -0.2
1,426,360 + +0.1
1,426,617 - CA264_06105 0.38 +0.6
1,426,674 - CA264_06105 0.46 -1.9
1,426,698 + CA264_06105 0.50 -0.6
1,426,881 - CA264_06105 0.78 -0.5
1,427,025 + -0.5
1,427,026 - -0.4
1,427,100 + +1.0
1,427,120 - -0.4
1,427,122 - +1.1
1,427,122 - +1.3

Or see this region's nucleotide sequence