Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04945

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04940 and CA264_04945 are separated by 4 nucleotidesCA264_04945 and CA264_04950 are separated by 115 nucleotidesCA264_04950 and CA264_04955 are separated by 2 nucleotides CA264_04940: CA264_04940 - hypothetical protein, at 1,148,408 to 1,150,102 _04940 CA264_04945: CA264_04945 - sporulation protein, at 1,150,107 to 1,151,270 _04945 CA264_04950: CA264_04950 - biopolymer transporter ExbB, at 1,151,386 to 1,151,982 _04950 CA264_04955: CA264_04955 - biopolymer transporter ExbD, at 1,151,985 to 1,152,380 _04955 Position (kb) 1150 1151 1152Strain fitness (log2 ratio) -3 -2 -1 0 1at 1149.440 kb on - strand, within CA264_04940at 1149.876 kb on - strand, within CA264_04940at 1150.103 kb on + strandat 1150.127 kb on + strandat 1150.127 kb on + strandat 1150.128 kb on - strandat 1150.143 kb on + strandat 1150.226 kb on + strand, within CA264_04945at 1150.227 kb on - strand, within CA264_04945at 1150.299 kb on - strand, within CA264_04945at 1150.429 kb on - strand, within CA264_04945at 1150.429 kb on - strand, within CA264_04945at 1150.458 kb on + strand, within CA264_04945at 1150.472 kb on + strand, within CA264_04945at 1150.472 kb on + strand, within CA264_04945at 1150.475 kb on + strand, within CA264_04945at 1150.476 kb on - strand, within CA264_04945at 1150.476 kb on - strand, within CA264_04945at 1150.522 kb on + strand, within CA264_04945at 1150.522 kb on + strand, within CA264_04945at 1150.528 kb on + strand, within CA264_04945at 1150.623 kb on + strand, within CA264_04945at 1150.623 kb on + strand, within CA264_04945at 1150.624 kb on - strand, within CA264_04945at 1150.699 kb on - strand, within CA264_04945at 1150.789 kb on - strand, within CA264_04945at 1150.824 kb on + strand, within CA264_04945at 1150.824 kb on + strand, within CA264_04945at 1150.825 kb on - strand, within CA264_04945at 1150.893 kb on + strand, within CA264_04945at 1150.970 kb on + strand, within CA264_04945at 1151.003 kb on - strand, within CA264_04945at 1151.052 kb on + strand, within CA264_04945at 1151.061 kb on - strand, within CA264_04945at 1151.261 kb on + strandat 1151.261 kb on + strandat 1151.285 kb on + strandat 1151.286 kb on - strandat 1151.289 kb on - strandat 1151.724 kb on + strand, within CA264_04950at 1151.981 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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1,149,440 - CA264_04940 0.61 -0.7
1,149,876 - CA264_04940 0.87 -1.1
1,150,103 + +0.4
1,150,127 + -1.3
1,150,127 + -0.4
1,150,128 - -2.2
1,150,143 + -1.0
1,150,226 + CA264_04945 0.10 -3.1
1,150,227 - CA264_04945 0.10 +0.2
1,150,299 - CA264_04945 0.16 +0.9
1,150,429 - CA264_04945 0.28 -2.4
1,150,429 - CA264_04945 0.28 -1.8
1,150,458 + CA264_04945 0.30 -0.7
1,150,472 + CA264_04945 0.31 -1.6
1,150,472 + CA264_04945 0.31 -1.6
1,150,475 + CA264_04945 0.32 +0.5
1,150,476 - CA264_04945 0.32 -2.3
1,150,476 - CA264_04945 0.32 -0.9
1,150,522 + CA264_04945 0.36 -2.5
1,150,522 + CA264_04945 0.36 -1.0
1,150,528 + CA264_04945 0.36 -2.8
1,150,623 + CA264_04945 0.44 -0.2
1,150,623 + CA264_04945 0.44 -0.4
1,150,624 - CA264_04945 0.44 -1.7
1,150,699 - CA264_04945 0.51 -0.4
1,150,789 - CA264_04945 0.59 -3.2
1,150,824 + CA264_04945 0.62 -2.6
1,150,824 + CA264_04945 0.62 -1.3
1,150,825 - CA264_04945 0.62 +0.6
1,150,893 + CA264_04945 0.68 -0.0
1,150,970 + CA264_04945 0.74 -1.7
1,151,003 - CA264_04945 0.77 -1.5
1,151,052 + CA264_04945 0.81 +0.3
1,151,061 - CA264_04945 0.82 -1.2
1,151,261 + +0.2
1,151,261 + -2.3
1,151,285 + -0.4
1,151,286 - -0.3
1,151,289 - +0.2
1,151,724 + CA264_04950 0.57 -0.0
1,151,981 - -0.3

Or see this region's nucleotide sequence