Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03990

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03985 and CA264_03990 are separated by 219 nucleotidesCA264_03990 and CA264_03995 are separated by 289 nucleotides CA264_03985: CA264_03985 - hypothetical protein, at 924,680 to 925,408 _03985 CA264_03990: CA264_03990 - alkyl hydroperoxide reductase, at 925,628 to 926,272 _03990 CA264_03995: CA264_03995 - hypothetical protein, at 926,562 to 926,924 _03995 Position (kb) 925 926 927Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 924.658 kb on + strandat 924.658 kb on + strandat 924.659 kb on - strandat 924.662 kb on + strandat 924.676 kb on - strandat 924.682 kb on - strandat 924.682 kb on - strandat 924.810 kb on - strand, within CA264_03985at 924.971 kb on - strand, within CA264_03985at 925.027 kb on + strand, within CA264_03985at 925.133 kb on + strand, within CA264_03985at 925.156 kb on + strand, within CA264_03985at 925.157 kb on - strand, within CA264_03985at 925.267 kb on + strand, within CA264_03985at 925.267 kb on + strand, within CA264_03985at 925.267 kb on + strand, within CA264_03985at 925.268 kb on - strand, within CA264_03985at 925.268 kb on - strand, within CA264_03985at 925.326 kb on - strand, within CA264_03985at 925.335 kb on + strand, within CA264_03985at 925.336 kb on - strandat 925.354 kb on - strandat 925.354 kb on - strandat 925.408 kb on + strandat 925.471 kb on - strandat 925.483 kb on - strandat 925.512 kb on + strandat 925.512 kb on + strandat 925.512 kb on + strandat 925.513 kb on - strandat 925.513 kb on - strandat 925.520 kb on + strandat 925.520 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.535 kb on - strandat 925.535 kb on - strandat 925.545 kb on + strandat 925.620 kb on - strandat 925.678 kb on - strandat 925.726 kb on + strand, within CA264_03990at 925.735 kb on + strand, within CA264_03990at 925.735 kb on + strand, within CA264_03990at 925.736 kb on - strand, within CA264_03990at 925.736 kb on - strand, within CA264_03990at 925.813 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.970 kb on + strand, within CA264_03990at 926.026 kb on + strand, within CA264_03990at 926.071 kb on + strand, within CA264_03990at 926.072 kb on - strand, within CA264_03990at 926.162 kb on + strand, within CA264_03990at 926.200 kb on - strand, within CA264_03990at 926.260 kb on + strandat 926.381 kb on + strandat 926.381 kb on + strandat 926.411 kb on + strandat 926.424 kb on + strandat 926.424 kb on + strandat 926.424 kb on + strandat 926.440 kb on - strandat 926.469 kb on + strandat 926.469 kb on + strandat 926.470 kb on - strandat 926.470 kb on - strandat 926.557 kb on - strandat 926.563 kb on + strandat 926.629 kb on - strand, within CA264_03995at 926.630 kb on + strand, within CA264_03995at 926.634 kb on + strand, within CA264_03995at 926.634 kb on + strand, within CA264_03995at 926.635 kb on - strand, within CA264_03995at 926.639 kb on + strand, within CA264_03995at 926.685 kb on - strand, within CA264_03995at 926.688 kb on + strand, within CA264_03995at 926.689 kb on - strand, within CA264_03995at 926.697 kb on + strand, within CA264_03995at 926.697 kb on + strand, within CA264_03995at 926.697 kb on + strand, within CA264_03995at 926.698 kb on - strand, within CA264_03995at 926.925 kb on - strandat 926.939 kb on + strandat 926.943 kb on - strandat 927.004 kb on - strandat 927.009 kb on - strandat 927.053 kb on - strandat 927.064 kb on - strandat 927.065 kb on + strandat 927.089 kb on + strandat 927.089 kb on + strandat 927.119 kb on + strandat 927.163 kb on + strandat 927.164 kb on - strandat 927.182 kb on - strandat 927.205 kb on + strandat 927.207 kb on + strandat 927.208 kb on - strandat 927.238 kb on + strandat 927.243 kb on + strandat 927.243 kb on + strandat 927.245 kb on + strandat 927.245 kb on + strandat 927.246 kb on - strandat 927.252 kb on + strandat 927.253 kb on - strandat 927.253 kb on - strandat 927.253 kb on - strandat 927.253 kb on - strandat 927.257 kb on + strandat 927.257 kb on + strandat 927.258 kb on - strandat 927.259 kb on + strandat 927.259 kb on + strandat 927.260 kb on - strandat 927.260 kb on - strandat 927.260 kb on - strandat 927.260 kb on - strandat 927.260 kb on - strandat 927.260 kb on - strandat 927.260 kb on - strandat 927.262 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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924,658 + +0.1
924,658 + +1.0
924,659 - -0.4
924,662 + -0.7
924,676 - +0.2
924,682 - -0.3
924,682 - -0.2
924,810 - CA264_03985 0.18 +0.7
924,971 - CA264_03985 0.40 +0.9
925,027 + CA264_03985 0.48 +0.3
925,133 + CA264_03985 0.62 -0.7
925,156 + CA264_03985 0.65 +1.1
925,157 - CA264_03985 0.65 +0.7
925,267 + CA264_03985 0.81 +0.5
925,267 + CA264_03985 0.81 -0.5
925,267 + CA264_03985 0.81 +0.3
925,268 - CA264_03985 0.81 +1.1
925,268 - CA264_03985 0.81 -0.3
925,326 - CA264_03985 0.89 -0.1
925,335 + CA264_03985 0.90 -1.4
925,336 - +0.4
925,354 - -0.3
925,354 - -1.3
925,408 + -2.1
925,471 - +0.7
925,483 - +0.1
925,512 + +0.3
925,512 + -0.6
925,512 + -0.4
925,513 - +0.3
925,513 - -0.2
925,520 + -1.0
925,520 + +0.2
925,534 + -0.4
925,534 + +0.2
925,534 + -0.4
925,534 + +0.2
925,534 + +1.1
925,534 + -1.0
925,535 - +0.9
925,535 - +0.9
925,545 + +0.0
925,620 - +0.1
925,678 - +0.1
925,726 + CA264_03990 0.15 +0.9
925,735 + CA264_03990 0.17 -0.2
925,735 + CA264_03990 0.17 -0.5
925,736 - CA264_03990 0.17 +1.0
925,736 - CA264_03990 0.17 +0.4
925,813 + CA264_03990 0.29 +0.1
925,910 + CA264_03990 0.44 +0.1
925,910 + CA264_03990 0.44 +0.3
925,910 + CA264_03990 0.44 -0.2
925,910 + CA264_03990 0.44 -0.4
925,910 + CA264_03990 0.44 +0.2
925,970 + CA264_03990 0.53 -0.3
926,026 + CA264_03990 0.62 -0.5
926,071 + CA264_03990 0.69 +0.9
926,072 - CA264_03990 0.69 -0.4
926,162 + CA264_03990 0.83 +1.1
926,200 - CA264_03990 0.89 +0.0
926,260 + +1.1
926,381 + +0.2
926,381 + -0.3
926,411 + -0.2
926,424 + -0.9
926,424 + +3.9
926,424 + +2.2
926,440 - +0.7
926,469 + +1.5
926,469 + +1.5
926,470 - +0.6
926,470 - -0.3
926,557 - +0.3
926,563 + +0.6
926,629 - CA264_03995 0.18 +0.2
926,630 + CA264_03995 0.19 -0.1
926,634 + CA264_03995 0.20 +0.8
926,634 + CA264_03995 0.20 +0.3
926,635 - CA264_03995 0.20 +0.7
926,639 + CA264_03995 0.21 -0.4
926,685 - CA264_03995 0.34 +0.5
926,688 + CA264_03995 0.35 +0.5
926,689 - CA264_03995 0.35 -0.1
926,697 + CA264_03995 0.37 +0.2
926,697 + CA264_03995 0.37 -0.2
926,697 + CA264_03995 0.37 +1.0
926,698 - CA264_03995 0.37 +1.0
926,925 - +1.3
926,939 + -0.3
926,943 - +0.5
927,004 - -0.4
927,009 - +0.1
927,053 - +0.6
927,064 - -1.0
927,065 + +0.2
927,089 + -0.7
927,089 + +0.5
927,119 + -0.3
927,163 + -0.2
927,164 - +0.3
927,182 - +0.5
927,205 + -0.4
927,207 + -1.0
927,208 - +2.3
927,238 + +1.2
927,243 + +1.3
927,243 + +0.1
927,245 + -1.9
927,245 + -0.1
927,246 - +0.0
927,252 + +1.3
927,253 - +1.7
927,253 - -0.3
927,253 - +2.0
927,253 - +0.5
927,257 + +1.0
927,257 + +0.3
927,258 - -0.2
927,259 + -0.2
927,259 + +0.4
927,260 - +0.7
927,260 - +0.5
927,260 - +0.0
927,260 - +0.1
927,260 - -1.6
927,260 - -0.3
927,260 - +1.0
927,262 + +0.6

Or see this region's nucleotide sequence