Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03800

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03795 and CA264_03800 are separated by 352 nucleotidesCA264_03800 and CA264_03805 are separated by 23 nucleotides CA264_03795: CA264_03795 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 888,054 to 888,788 _03795 CA264_03800: CA264_03800 - hypothetical protein, at 889,141 to 889,491 _03800 CA264_03805: CA264_03805 - serine protease, at 889,515 to 890,885 _03805 Position (kb) 889 890Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 888.780 kb on + strandat 888.795 kb on + strandat 888.796 kb on - strandat 888.803 kb on - strandat 888.821 kb on - strandat 888.905 kb on + strandat 888.991 kb on + strandat 889.042 kb on - strandat 889.042 kb on - strandat 889.058 kb on - strandat 889.073 kb on + strandat 889.076 kb on + strandat 889.077 kb on - strandat 889.077 kb on - strandat 889.078 kb on + strandat 889.095 kb on + strandat 889.140 kb on - strandat 889.145 kb on - strandat 889.238 kb on + strand, within CA264_03800at 889.238 kb on + strand, within CA264_03800at 889.310 kb on + strand, within CA264_03800at 889.324 kb on + strand, within CA264_03800at 889.324 kb on + strand, within CA264_03800at 889.358 kb on - strand, within CA264_03800at 889.376 kb on - strand, within CA264_03800at 889.505 kb on + strandat 889.505 kb on + strandat 889.506 kb on - strandat 889.506 kb on - strandat 889.534 kb on - strandat 889.624 kb on + strandat 889.625 kb on - strandat 889.630 kb on - strandat 889.630 kb on - strandat 889.630 kb on - strandat 889.639 kb on - strandat 889.639 kb on - strandat 889.644 kb on - strandat 889.673 kb on - strand, within CA264_03805at 889.769 kb on + strand, within CA264_03805at 889.769 kb on + strand, within CA264_03805at 889.769 kb on + strand, within CA264_03805at 889.769 kb on + strand, within CA264_03805at 889.851 kb on - strand, within CA264_03805at 889.927 kb on - strand, within CA264_03805at 889.959 kb on - strand, within CA264_03805at 890.056 kb on + strand, within CA264_03805at 890.056 kb on + strand, within CA264_03805at 890.057 kb on - strand, within CA264_03805at 890.059 kb on + strand, within CA264_03805at 890.060 kb on - strand, within CA264_03805at 890.060 kb on - strand, within CA264_03805at 890.060 kb on - strand, within CA264_03805at 890.060 kb on - strand, within CA264_03805at 890.071 kb on + strand, within CA264_03805at 890.072 kb on - strand, within CA264_03805at 890.113 kb on - strand, within CA264_03805at 890.137 kb on + strand, within CA264_03805at 890.153 kb on + strand, within CA264_03805at 890.337 kb on - strand, within CA264_03805at 890.368 kb on - strand, within CA264_03805at 890.368 kb on - strand, within CA264_03805at 890.435 kb on + strand, within CA264_03805at 890.449 kb on + strand, within CA264_03805at 890.449 kb on + strand, within CA264_03805at 890.449 kb on + strand, within CA264_03805at 890.450 kb on - strand, within CA264_03805at 890.458 kb on + strand, within CA264_03805at 890.459 kb on - strand, within CA264_03805

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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888,780 + -0.3
888,795 + +0.1
888,796 - +0.4
888,803 - +0.1
888,821 - -3.1
888,905 + +0.2
888,991 + -0.0
889,042 - -0.7
889,042 - -0.8
889,058 - -0.7
889,073 + -1.7
889,076 + +0.4
889,077 - +1.1
889,077 - +1.1
889,078 + +0.3
889,095 + -0.1
889,140 - +0.4
889,145 - +0.8
889,238 + CA264_03800 0.28 -0.3
889,238 + CA264_03800 0.28 +0.0
889,310 + CA264_03800 0.48 -0.3
889,324 + CA264_03800 0.52 +2.2
889,324 + CA264_03800 0.52 -1.5
889,358 - CA264_03800 0.62 -1.4
889,376 - CA264_03800 0.67 +0.3
889,505 + -0.0
889,505 + -0.8
889,506 - -0.2
889,506 - -1.3
889,534 - +0.2
889,624 + -0.5
889,625 - -0.3
889,630 - +0.1
889,630 - -0.3
889,630 - -0.6
889,639 - +0.2
889,639 - -0.3
889,644 - -2.1
889,673 - CA264_03805 0.12 -0.9
889,769 + CA264_03805 0.19 -0.7
889,769 + CA264_03805 0.19 -0.7
889,769 + CA264_03805 0.19 -0.3
889,769 + CA264_03805 0.19 -0.4
889,851 - CA264_03805 0.25 +0.5
889,927 - CA264_03805 0.30 -0.4
889,959 - CA264_03805 0.32 -2.0
890,056 + CA264_03805 0.39 +0.3
890,056 + CA264_03805 0.39 -0.7
890,057 - CA264_03805 0.40 +0.2
890,059 + CA264_03805 0.40 -0.7
890,060 - CA264_03805 0.40 +0.7
890,060 - CA264_03805 0.40 +0.0
890,060 - CA264_03805 0.40 +1.3
890,060 - CA264_03805 0.40 +1.0
890,071 + CA264_03805 0.41 +0.4
890,072 - CA264_03805 0.41 -0.4
890,113 - CA264_03805 0.44 +0.3
890,137 + CA264_03805 0.45 -0.3
890,153 + CA264_03805 0.47 +0.2
890,337 - CA264_03805 0.60 +0.1
890,368 - CA264_03805 0.62 -0.3
890,368 - CA264_03805 0.62 -0.2
890,435 + CA264_03805 0.67 +0.1
890,449 + CA264_03805 0.68 +0.5
890,449 + CA264_03805 0.68 -0.4
890,449 + CA264_03805 0.68 -0.9
890,450 - CA264_03805 0.68 -0.5
890,458 + CA264_03805 0.69 -1.4
890,459 - CA264_03805 0.69 -1.4

Or see this region's nucleotide sequence