Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03500

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03495 and CA264_03500 are separated by 139 nucleotidesCA264_03500 and CA264_03505 are separated by 345 nucleotides CA264_03495: CA264_03495 - tRNA pseudouridine(38-40) synthase TruA, at 813,592 to 814,401 _03495 CA264_03500: CA264_03500 - excinuclease ABC subunit A, at 814,541 to 817,096 _03500 CA264_03505: CA264_03505 - hypothetical protein, at 817,442 to 818,059 _03505 Position (kb) 814 815 816 817 818Strain fitness (log2 ratio) -2 -1 0 1 2at 813.564 kb on + strandat 813.619 kb on - strandat 813.675 kb on - strand, within CA264_03495at 813.689 kb on - strand, within CA264_03495at 813.692 kb on + strand, within CA264_03495at 813.693 kb on - strand, within CA264_03495at 813.805 kb on + strand, within CA264_03495at 813.805 kb on + strand, within CA264_03495at 813.806 kb on - strand, within CA264_03495at 813.811 kb on + strand, within CA264_03495at 813.812 kb on - strand, within CA264_03495at 813.847 kb on + strand, within CA264_03495at 813.902 kb on - strand, within CA264_03495at 813.902 kb on - strand, within CA264_03495at 813.902 kb on - strand, within CA264_03495at 813.953 kb on + strand, within CA264_03495at 814.023 kb on - strand, within CA264_03495at 814.080 kb on - strand, within CA264_03495at 814.185 kb on + strand, within CA264_03495at 814.273 kb on - strand, within CA264_03495at 814.273 kb on - strand, within CA264_03495at 814.288 kb on - strand, within CA264_03495at 814.361 kb on + strandat 814.362 kb on - strandat 814.679 kb on + strandat 814.679 kb on + strandat 814.680 kb on - strandat 814.680 kb on - strandat 814.680 kb on - strandat 814.680 kb on - strandat 814.680 kb on - strandat 814.714 kb on + strandat 814.715 kb on - strandat 814.715 kb on - strandat 814.725 kb on - strandat 814.725 kb on - strandat 814.725 kb on - strandat 814.767 kb on - strandat 814.767 kb on - strandat 814.824 kb on + strand, within CA264_03500at 814.955 kb on - strand, within CA264_03500at 814.955 kb on - strand, within CA264_03500at 814.968 kb on - strand, within CA264_03500at 815.047 kb on - strand, within CA264_03500at 815.208 kb on + strand, within CA264_03500at 815.274 kb on + strand, within CA264_03500at 815.274 kb on + strand, within CA264_03500at 815.339 kb on + strand, within CA264_03500at 815.518 kb on + strand, within CA264_03500at 815.519 kb on - strand, within CA264_03500at 815.667 kb on - strand, within CA264_03500at 815.776 kb on + strand, within CA264_03500at 815.777 kb on - strand, within CA264_03500at 815.886 kb on + strand, within CA264_03500at 815.886 kb on + strand, within CA264_03500at 815.886 kb on + strand, within CA264_03500at 815.887 kb on - strand, within CA264_03500at 815.887 kb on - strand, within CA264_03500at 815.959 kb on + strand, within CA264_03500at 815.959 kb on + strand, within CA264_03500at 815.959 kb on + strand, within CA264_03500at 815.960 kb on - strand, within CA264_03500at 815.960 kb on - strand, within CA264_03500at 815.986 kb on - strand, within CA264_03500at 816.251 kb on - strand, within CA264_03500at 816.290 kb on - strand, within CA264_03500at 816.343 kb on - strand, within CA264_03500at 816.430 kb on + strand, within CA264_03500at 816.685 kb on + strand, within CA264_03500at 816.724 kb on - strand, within CA264_03500at 816.724 kb on - strand, within CA264_03500at 816.840 kb on - strand, within CA264_03500at 817.080 kb on + strandat 817.081 kb on - strandat 817.104 kb on + strandat 817.273 kb on + strandat 817.391 kb on + strandat 817.391 kb on + strandat 817.391 kb on + strandat 817.413 kb on + strandat 817.413 kb on + strandat 817.413 kb on + strandat 817.494 kb on + strandat 817.495 kb on - strandat 817.551 kb on - strand, within CA264_03505at 817.612 kb on + strand, within CA264_03505at 817.612 kb on + strand, within CA264_03505at 817.613 kb on - strand, within CA264_03505at 817.613 kb on - strand, within CA264_03505at 817.614 kb on + strand, within CA264_03505at 817.615 kb on - strand, within CA264_03505at 817.627 kb on + strand, within CA264_03505at 817.653 kb on - strand, within CA264_03505at 817.688 kb on - strand, within CA264_03505at 817.688 kb on - strand, within CA264_03505at 817.719 kb on - strand, within CA264_03505at 817.721 kb on - strand, within CA264_03505at 817.893 kb on - strand, within CA264_03505at 817.928 kb on + strand, within CA264_03505at 817.928 kb on + strand, within CA264_03505at 817.934 kb on + strand, within CA264_03505at 817.942 kb on + strand, within CA264_03505at 817.942 kb on + strand, within CA264_03505at 817.942 kb on + strand, within CA264_03505at 817.943 kb on - strand, within CA264_03505at 817.943 kb on - strand, within CA264_03505at 817.943 kb on - strand, within CA264_03505at 817.951 kb on - strand, within CA264_03505at 817.951 kb on - strand, within CA264_03505at 817.977 kb on - strand, within CA264_03505at 818.041 kb on + strandat 818.042 kb on - strandat 818.045 kb on + strandat 818.045 kb on + strandat 818.045 kb on + strandat 818.046 kb on - strandat 818.065 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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813,564 + +0.8
813,619 - -0.2
813,675 - CA264_03495 0.10 +0.2
813,689 - CA264_03495 0.12 -1.6
813,692 + CA264_03495 0.12 -0.6
813,693 - CA264_03495 0.12 +0.2
813,805 + CA264_03495 0.26 -0.3
813,805 + CA264_03495 0.26 +0.0
813,806 - CA264_03495 0.26 -0.3
813,811 + CA264_03495 0.27 +0.0
813,812 - CA264_03495 0.27 -0.0
813,847 + CA264_03495 0.31 -0.6
813,902 - CA264_03495 0.38 -0.6
813,902 - CA264_03495 0.38 -1.7
813,902 - CA264_03495 0.38 -0.2
813,953 + CA264_03495 0.45 -0.3
814,023 - CA264_03495 0.53 +0.2
814,080 - CA264_03495 0.60 -0.3
814,185 + CA264_03495 0.73 -2.0
814,273 - CA264_03495 0.84 +0.4
814,273 - CA264_03495 0.84 -0.5
814,288 - CA264_03495 0.86 -0.3
814,361 + +1.7
814,362 - +0.5
814,679 + -0.2
814,679 + +1.3
814,680 - -1.2
814,680 - +1.6
814,680 - -0.9
814,680 - +0.1
814,680 - -0.7
814,714 + +0.2
814,715 - +0.4
814,715 - -0.1
814,725 - -0.4
814,725 - -0.4
814,725 - -0.7
814,767 - +0.2
814,767 - +0.5
814,824 + CA264_03500 0.11 -0.4
814,955 - CA264_03500 0.16 -0.1
814,955 - CA264_03500 0.16 +0.3
814,968 - CA264_03500 0.17 +0.4
815,047 - CA264_03500 0.20 +0.6
815,208 + CA264_03500 0.26 -0.4
815,274 + CA264_03500 0.29 +1.9
815,274 + CA264_03500 0.29 -1.0
815,339 + CA264_03500 0.31 -0.5
815,518 + CA264_03500 0.38 +1.6
815,519 - CA264_03500 0.38 -0.3
815,667 - CA264_03500 0.44 -0.6
815,776 + CA264_03500 0.48 +0.0
815,777 - CA264_03500 0.48 +0.8
815,886 + CA264_03500 0.53 +0.0
815,886 + CA264_03500 0.53 +0.0
815,886 + CA264_03500 0.53 -0.6
815,887 - CA264_03500 0.53 -0.5
815,887 - CA264_03500 0.53 -0.1
815,959 + CA264_03500 0.55 -0.4
815,959 + CA264_03500 0.55 -0.7
815,959 + CA264_03500 0.55 +0.5
815,960 - CA264_03500 0.56 -0.6
815,960 - CA264_03500 0.56 +0.4
815,986 - CA264_03500 0.57 -1.2
816,251 - CA264_03500 0.67 -2.1
816,290 - CA264_03500 0.68 -0.8
816,343 - CA264_03500 0.71 -0.8
816,430 + CA264_03500 0.74 -0.5
816,685 + CA264_03500 0.84 +0.3
816,724 - CA264_03500 0.85 +0.3
816,724 - CA264_03500 0.85 -0.4
816,840 - CA264_03500 0.90 -0.8
817,080 + -1.1
817,081 - -0.4
817,104 + -0.4
817,273 + +0.5
817,391 + -0.4
817,391 + +1.0
817,391 + -0.2
817,413 + -1.5
817,413 + +0.5
817,413 + +0.7
817,494 + +1.6
817,495 - -0.8
817,551 - CA264_03505 0.18 -0.5
817,612 + CA264_03505 0.28 -0.6
817,612 + CA264_03505 0.28 +0.8
817,613 - CA264_03505 0.28 -0.0
817,613 - CA264_03505 0.28 -0.3
817,614 + CA264_03505 0.28 +0.8
817,615 - CA264_03505 0.28 -0.2
817,627 + CA264_03505 0.30 +0.3
817,653 - CA264_03505 0.34 +0.4
817,688 - CA264_03505 0.40 +0.7
817,688 - CA264_03505 0.40 +0.6
817,719 - CA264_03505 0.45 +0.9
817,721 - CA264_03505 0.45 +0.6
817,893 - CA264_03505 0.73 -0.6
817,928 + CA264_03505 0.79 +0.2
817,928 + CA264_03505 0.79 +0.8
817,934 + CA264_03505 0.80 +1.4
817,942 + CA264_03505 0.81 +1.8
817,942 + CA264_03505 0.81 -0.6
817,942 + CA264_03505 0.81 -0.7
817,943 - CA264_03505 0.81 +0.2
817,943 - CA264_03505 0.81 +0.9
817,943 - CA264_03505 0.81 -1.2
817,951 - CA264_03505 0.82 +0.3
817,951 - CA264_03505 0.82 -0.1
817,977 - CA264_03505 0.87 +0.2
818,041 + +0.2
818,042 - +0.5
818,045 + +0.5
818,045 + -1.7
818,045 + +0.4
818,046 - -1.0
818,065 - -0.6

Or see this region's nucleotide sequence