Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03200

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03195 and CA264_03200 are separated by 146 nucleotidesCA264_03200 and CA264_03205 are separated by 118 nucleotides CA264_03195: CA264_03195 - alpha-glucan family phosphorylase, at 747,752 to 749,407 _03195 CA264_03200: CA264_03200 - aminoacyl-histidine dipeptidase, at 749,554 to 751,017 _03200 CA264_03205: CA264_03205 - hypothetical protein, at 751,136 to 752,185 _03205 Position (kb) 749 750 751 752Strain fitness (log2 ratio) -2 -1 0 1 2at 748.823 kb on + strand, within CA264_03195at 748.876 kb on + strand, within CA264_03195at 748.877 kb on - strand, within CA264_03195at 748.903 kb on + strand, within CA264_03195at 748.915 kb on + strand, within CA264_03195at 748.945 kb on + strand, within CA264_03195at 748.946 kb on - strand, within CA264_03195at 748.946 kb on - strand, within CA264_03195at 748.971 kb on + strand, within CA264_03195at 748.972 kb on - strand, within CA264_03195at 749.010 kb on - strand, within CA264_03195at 749.113 kb on + strand, within CA264_03195at 749.114 kb on - strand, within CA264_03195at 749.127 kb on + strand, within CA264_03195at 749.243 kb on + strandat 749.244 kb on - strandat 749.244 kb on - strandat 749.288 kb on + strandat 749.320 kb on + strandat 749.321 kb on - strandat 749.321 kb on - strandat 749.385 kb on - strandat 749.385 kb on - strandat 749.385 kb on - strandat 749.402 kb on - strandat 749.413 kb on - strandat 749.419 kb on + strandat 749.419 kb on + strandat 749.420 kb on - strandat 749.457 kb on - strandat 749.518 kb on + strandat 749.518 kb on + strandat 749.523 kb on + strandat 749.524 kb on - strandat 749.534 kb on + strandat 749.541 kb on + strandat 749.542 kb on - strandat 749.549 kb on - strandat 749.708 kb on - strand, within CA264_03200at 749.708 kb on - strand, within CA264_03200at 749.708 kb on - strand, within CA264_03200at 749.708 kb on - strand, within CA264_03200at 749.784 kb on + strand, within CA264_03200at 749.785 kb on - strand, within CA264_03200at 749.785 kb on - strand, within CA264_03200at 749.942 kb on + strand, within CA264_03200at 749.942 kb on + strand, within CA264_03200at 749.942 kb on + strand, within CA264_03200at 750.037 kb on - strand, within CA264_03200at 750.122 kb on - strand, within CA264_03200at 750.122 kb on - strand, within CA264_03200at 750.122 kb on - strand, within CA264_03200at 750.122 kb on - strand, within CA264_03200at 750.144 kb on - strand, within CA264_03200at 750.159 kb on + strand, within CA264_03200at 750.199 kb on - strand, within CA264_03200at 750.244 kb on - strand, within CA264_03200at 750.244 kb on - strand, within CA264_03200at 750.268 kb on + strand, within CA264_03200at 750.268 kb on + strand, within CA264_03200at 750.269 kb on - strand, within CA264_03200at 750.353 kb on - strand, within CA264_03200at 750.354 kb on + strand, within CA264_03200at 750.354 kb on + strand, within CA264_03200at 750.354 kb on + strand, within CA264_03200at 750.355 kb on - strandat 750.355 kb on - strand, within CA264_03200at 750.441 kb on - strand, within CA264_03200at 750.441 kb on - strand, within CA264_03200at 750.637 kb on + strand, within CA264_03200at 750.719 kb on + strand, within CA264_03200at 750.719 kb on + strand, within CA264_03200at 750.719 kb on + strand, within CA264_03200at 750.719 kb on + strand, within CA264_03200at 750.719 kb on + strand, within CA264_03200at 750.720 kb on - strand, within CA264_03200at 750.720 kb on - strand, within CA264_03200at 750.720 kb on - strand, within CA264_03200at 750.720 kb on - strand, within CA264_03200at 750.720 kb on - strand, within CA264_03200at 750.726 kb on + strand, within CA264_03200at 750.843 kb on + strand, within CA264_03200at 750.887 kb on - strandat 751.003 kb on + strandat 751.017 kb on + strandat 751.042 kb on - strandat 751.067 kb on + strandat 751.068 kb on - strandat 751.126 kb on - strandat 751.151 kb on + strandat 751.242 kb on - strand, within CA264_03205at 751.267 kb on + strand, within CA264_03205at 751.267 kb on + strand, within CA264_03205at 751.268 kb on - strand, within CA264_03205at 751.299 kb on + strand, within CA264_03205at 751.351 kb on - strand, within CA264_03205at 751.361 kb on + strand, within CA264_03205at 751.481 kb on + strand, within CA264_03205at 751.482 kb on - strand, within CA264_03205at 751.521 kb on + strand, within CA264_03205at 751.708 kb on - strand, within CA264_03205at 751.737 kb on + strand, within CA264_03205at 751.737 kb on + strand, within CA264_03205at 751.738 kb on - strand, within CA264_03205at 751.740 kb on - strand, within CA264_03205at 751.740 kb on - strand, within CA264_03205at 751.794 kb on + strand, within CA264_03205at 751.893 kb on + strand, within CA264_03205at 751.893 kb on + strand, within CA264_03205at 751.894 kb on - strand, within CA264_03205at 751.895 kb on + strand, within CA264_03205at 751.896 kb on - strand, within CA264_03205at 752.010 kb on + strand, within CA264_03205

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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748,823 + CA264_03195 0.65 +0.4
748,876 + CA264_03195 0.68 -0.8
748,877 - CA264_03195 0.68 -0.8
748,903 + CA264_03195 0.70 -0.4
748,915 + CA264_03195 0.70 +0.0
748,945 + CA264_03195 0.72 +0.0
748,946 - CA264_03195 0.72 -0.4
748,946 - CA264_03195 0.72 -0.6
748,971 + CA264_03195 0.74 +1.3
748,972 - CA264_03195 0.74 -2.4
749,010 - CA264_03195 0.76 -0.3
749,113 + CA264_03195 0.82 +0.4
749,114 - CA264_03195 0.82 +0.1
749,127 + CA264_03195 0.83 +0.7
749,243 + -1.3
749,244 - -0.3
749,244 - -0.3
749,288 + -2.3
749,320 + +0.1
749,321 - -0.6
749,321 - +0.6
749,385 - -0.9
749,385 - -0.4
749,385 - +0.6
749,402 - -0.3
749,413 - -0.5
749,419 + +0.4
749,419 + -0.9
749,420 - -0.4
749,457 - -0.9
749,518 + +0.7
749,518 + +0.9
749,523 + -0.4
749,524 - +0.6
749,534 + +1.0
749,541 + +0.9
749,542 - +0.5
749,549 - +0.3
749,708 - CA264_03200 0.11 +1.0
749,708 - CA264_03200 0.11 +1.0
749,708 - CA264_03200 0.11 +0.8
749,708 - CA264_03200 0.11 +0.6
749,784 + CA264_03200 0.16 +0.5
749,785 - CA264_03200 0.16 -1.2
749,785 - CA264_03200 0.16 +0.2
749,942 + CA264_03200 0.27 -1.7
749,942 + CA264_03200 0.27 +0.2
749,942 + CA264_03200 0.27 +0.5
750,037 - CA264_03200 0.33 +0.3
750,122 - CA264_03200 0.39 -0.5
750,122 - CA264_03200 0.39 -0.4
750,122 - CA264_03200 0.39 -0.3
750,122 - CA264_03200 0.39 -0.4
750,144 - CA264_03200 0.40 +2.6
750,159 + CA264_03200 0.41 +0.8
750,199 - CA264_03200 0.44 -2.1
750,244 - CA264_03200 0.47 +1.1
750,244 - CA264_03200 0.47 +0.1
750,268 + CA264_03200 0.49 +0.7
750,268 + CA264_03200 0.49 +0.5
750,269 - CA264_03200 0.49 +0.7
750,353 - CA264_03200 0.55 +0.5
750,354 + CA264_03200 0.55 -0.3
750,354 + CA264_03200 0.55 +0.3
750,354 + CA264_03200 0.55 +1.4
750,355 - +1.3
750,355 - CA264_03200 0.55 +0.0
750,441 - CA264_03200 0.61 +1.1
750,441 - CA264_03200 0.61 -0.1
750,637 + CA264_03200 0.74 +0.6
750,719 + CA264_03200 0.80 +0.6
750,719 + CA264_03200 0.80 +0.4
750,719 + CA264_03200 0.80 +0.8
750,719 + CA264_03200 0.80 +0.4
750,719 + CA264_03200 0.80 +0.8
750,720 - CA264_03200 0.80 -0.4
750,720 - CA264_03200 0.80 -0.2
750,720 - CA264_03200 0.80 +0.1
750,720 - CA264_03200 0.80 -0.8
750,720 - CA264_03200 0.80 +0.9
750,726 + CA264_03200 0.80 +1.3
750,843 + CA264_03200 0.88 +0.7
750,887 - +0.3
751,003 + +1.0
751,017 + -0.5
751,042 - +0.3
751,067 + +0.3
751,068 - -0.1
751,126 - -0.1
751,151 + -0.3
751,242 - CA264_03205 0.10 -0.1
751,267 + CA264_03205 0.12 -0.2
751,267 + CA264_03205 0.12 -1.5
751,268 - CA264_03205 0.13 -0.2
751,299 + CA264_03205 0.16 -0.3
751,351 - CA264_03205 0.20 -0.6
751,361 + CA264_03205 0.21 +0.6
751,481 + CA264_03205 0.33 -0.3
751,482 - CA264_03205 0.33 +0.2
751,521 + CA264_03205 0.37 -1.0
751,708 - CA264_03205 0.54 -1.4
751,737 + CA264_03205 0.57 +0.5
751,737 + CA264_03205 0.57 +0.1
751,738 - CA264_03205 0.57 -0.5
751,740 - CA264_03205 0.58 -0.6
751,740 - CA264_03205 0.58 -0.7
751,794 + CA264_03205 0.63 -0.7
751,893 + CA264_03205 0.72 -1.1
751,893 + CA264_03205 0.72 -0.1
751,894 - CA264_03205 0.72 -0.1
751,895 + CA264_03205 0.72 -0.9
751,896 - CA264_03205 0.72 -0.3
752,010 + CA264_03205 0.83 -0.4

Or see this region's nucleotide sequence