Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02870

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02865 and CA264_02870 are separated by 71 nucleotidesCA264_02870 and CA264_02875 are separated by 91 nucleotides CA264_02865: CA264_02865 - fatty acid hydroxylase, at 656,100 to 657,062 _02865 CA264_02870: CA264_02870 - hypothetical protein, at 657,134 to 657,571 _02870 CA264_02875: CA264_02875 - hypothetical protein, at 657,663 to 658,712 _02875 Position (kb) 657 658Strain fitness (log2 ratio) -2 -1 0 1 2at 656.163 kb on + strandat 656.164 kb on - strandat 656.164 kb on - strandat 656.217 kb on + strand, within CA264_02865at 656.334 kb on - strand, within CA264_02865at 656.337 kb on + strand, within CA264_02865at 656.337 kb on + strand, within CA264_02865at 656.338 kb on - strand, within CA264_02865at 656.616 kb on + strand, within CA264_02865at 656.616 kb on + strand, within CA264_02865at 656.633 kb on + strand, within CA264_02865at 656.634 kb on - strand, within CA264_02865at 656.670 kb on + strand, within CA264_02865at 656.671 kb on - strand, within CA264_02865at 656.671 kb on - strand, within CA264_02865at 656.671 kb on - strand, within CA264_02865at 656.671 kb on - strand, within CA264_02865at 656.681 kb on + strand, within CA264_02865at 656.724 kb on + strand, within CA264_02865at 656.739 kb on + strand, within CA264_02865at 656.740 kb on - strand, within CA264_02865at 656.804 kb on - strand, within CA264_02865at 656.837 kb on + strand, within CA264_02865at 656.838 kb on - strand, within CA264_02865at 656.847 kb on + strand, within CA264_02865at 656.930 kb on + strand, within CA264_02865at 657.033 kb on + strandat 657.060 kb on + strandat 657.081 kb on + strandat 657.081 kb on + strandat 657.082 kb on - strandat 657.082 kb on - strandat 657.096 kb on - strandat 657.096 kb on - strandat 657.136 kb on - strandat 657.136 kb on - strandat 657.136 kb on - strandat 657.138 kb on + strandat 657.139 kb on - strandat 657.139 kb on - strandat 657.139 kb on - strandat 657.231 kb on + strand, within CA264_02870at 657.266 kb on + strand, within CA264_02870at 657.266 kb on + strand, within CA264_02870at 657.267 kb on - strand, within CA264_02870at 657.267 kb on - strand, within CA264_02870at 657.267 kb on - strand, within CA264_02870at 657.549 kb on - strandat 657.607 kb on + strandat 657.608 kb on - strandat 657.656 kb on - strandat 657.656 kb on - strandat 657.664 kb on + strandat 657.682 kb on + strandat 657.733 kb on + strandat 657.734 kb on - strandat 657.734 kb on - strandat 657.899 kb on - strand, within CA264_02875at 657.899 kb on - strand, within CA264_02875at 657.899 kb on - strand, within CA264_02875at 657.905 kb on + strand, within CA264_02875at 657.985 kb on + strand, within CA264_02875at 658.042 kb on + strand, within CA264_02875at 658.044 kb on + strand, within CA264_02875at 658.093 kb on + strand, within CA264_02875at 658.093 kb on + strand, within CA264_02875at 658.093 kb on + strand, within CA264_02875at 658.094 kb on - strand, within CA264_02875at 658.381 kb on + strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.423 kb on + strand, within CA264_02875at 658.482 kb on - strand, within CA264_02875at 658.556 kb on + strand, within CA264_02875

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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656,163 + -0.3
656,164 - +0.4
656,164 - +0.0
656,217 + CA264_02865 0.12 +0.0
656,334 - CA264_02865 0.24 +0.7
656,337 + CA264_02865 0.25 -0.0
656,337 + CA264_02865 0.25 +0.0
656,338 - CA264_02865 0.25 -0.1
656,616 + CA264_02865 0.54 +0.6
656,616 + CA264_02865 0.54 +0.3
656,633 + CA264_02865 0.55 +0.1
656,634 - CA264_02865 0.55 -0.2
656,670 + CA264_02865 0.59 -1.5
656,671 - CA264_02865 0.59 +0.9
656,671 - CA264_02865 0.59 -1.9
656,671 - CA264_02865 0.59 +0.6
656,671 - CA264_02865 0.59 -0.3
656,681 + CA264_02865 0.60 -0.7
656,724 + CA264_02865 0.65 +0.6
656,739 + CA264_02865 0.66 +0.3
656,740 - CA264_02865 0.66 +0.1
656,804 - CA264_02865 0.73 +0.6
656,837 + CA264_02865 0.77 +0.8
656,838 - CA264_02865 0.77 -0.9
656,847 + CA264_02865 0.78 -0.9
656,930 + CA264_02865 0.86 -0.4
657,033 + +0.4
657,060 + +0.9
657,081 + -0.7
657,081 + +1.0
657,082 - +0.4
657,082 - -0.8
657,096 - +2.1
657,096 - +0.7
657,136 - -0.6
657,136 - -0.3
657,136 - +0.1
657,138 + -0.3
657,139 - -0.6
657,139 - -0.9
657,139 - -0.2
657,231 + CA264_02870 0.22 -0.4
657,266 + CA264_02870 0.30 -0.8
657,266 + CA264_02870 0.30 -0.4
657,267 - CA264_02870 0.30 -0.1
657,267 - CA264_02870 0.30 -2.1
657,267 - CA264_02870 0.30 -1.3
657,549 - -1.3
657,607 + +2.0
657,608 - -0.9
657,656 - -1.5
657,656 - -0.1
657,664 + +0.3
657,682 + -0.1
657,733 + -0.1
657,734 - -0.2
657,734 - -0.1
657,899 - CA264_02875 0.22 +1.6
657,899 - CA264_02875 0.22 +0.1
657,899 - CA264_02875 0.22 +1.6
657,905 + CA264_02875 0.23 -0.5
657,985 + CA264_02875 0.31 -1.0
658,042 + CA264_02875 0.36 -0.3
658,044 + CA264_02875 0.36 +0.6
658,093 + CA264_02875 0.41 +0.4
658,093 + CA264_02875 0.41 +0.4
658,093 + CA264_02875 0.41 +1.6
658,094 - CA264_02875 0.41 +0.6
658,381 + CA264_02875 0.68 -0.6
658,382 - CA264_02875 0.68 -0.0
658,382 - CA264_02875 0.68 -0.2
658,382 - CA264_02875 0.68 +0.6
658,382 - CA264_02875 0.68 -0.6
658,382 - CA264_02875 0.68 -1.4
658,382 - CA264_02875 0.68 -1.3
658,382 - CA264_02875 0.68 +1.3
658,423 + CA264_02875 0.72 -0.0
658,482 - CA264_02875 0.78 -0.9
658,556 + CA264_02875 0.85 -0.5

Or see this region's nucleotide sequence